MicroSyn: A user friendly tool for detection of microsynteny in a gene family |
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| Authors: | Bin Cai Xiaohan Yang Gerald A Tuskan Zong-Ming Cheng |
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| Affiliation: | (1) College of Horticulture, Nanjing Agricultural University, Nanjing, China;(2) Department of Plant Sciences, University of Tennessee, Knoxville, TN, USA;(3) Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA;(4) BioEnergy Science Center, Oak Ridge National Laboratory, Oak Ridge, TN, USA |
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| Abstract: | ![]()
Background The traditional phylogeny analysis within gene family is mainly based on DNA or amino acid sequence homologies. However, these phylogenetic tree analyses are not suitable for those "non-traditional" gene families like microRNA with very short sequences. For the normal protein-coding gene families, low bootstrap values are frequently encountered in some nodes, suggesting low confidence or likely inappropriateness of placement of those members in those nodes. |
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