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A collection of enhancer trap insertional mutants for functional genomics in tomato
Authors:Fernando Pérez‐Martín  Fernando J Yuste‐Lisbona  Benito Pineda  María Pilar Angarita‐Díaz  Begoña García‐Sogo  Teresa Antón  Sibilla Sánchez  Estela Giménez  Alejandro Atarés  Antonia Fernández‐Lozano  Ana Ortíz‐Atienza  Manuel García‐Alcázar  Laura Castañeda  Rocío Fonseca  Carmen Capel  Geraldine Goergen  Jorge Sánchez  Jorge L Quispe  Juan Capel  Trinidad Angosto  Vicente Moreno  Rafael Lozano
Institution:1. Centro de Investigación en Biotecnología Agroalimentaria (BITAL), Universidad de Almería, Almería, Spain;2. Instituto de Biología Molecular y Celular de Plantas (UPV‐CSIC), Universidad Politécnica de Valencia, Valencia, Spain
Abstract:With the completion of genome sequencing projects, the next challenge is to close the gap between gene annotation and gene functional assignment. Genomic tools to identify gene functions are based on the analysis of phenotypic variations between a wild type and its mutant; hence, mutant collections are a valuable resource. In this sense, T‐DNA collections allow for an easy and straightforward identification of the tagged gene, serving as the basis of both forward and reverse genetic strategies. This study reports on the phenotypic and molecular characterization of an enhancer trap T‐DNA collection in tomato (Solanum lycopersicum L.), which has been produced by Agrobacterium‐mediated transformation using a binary vector bearing a minimal promoter fused to the uidA reporter gene. Two genes have been isolated from different T‐DNA mutants, one of these genes codes for a UTP‐glucose‐1‐phosphate uridylyltransferase involved in programmed cell death and leaf development, which means a novel gene function reported in tomato. Together, our results support that enhancer trapping is a powerful tool to identify novel genes and regulatory elements in tomato and that this T‐DNA mutant collection represents a highly valuable resource for functional analyses in this fleshy‐fruited model species.
Keywords:T‐DNA  enhancer trapping     Solanum lycopersicum     functional genomics  insertional mutagenesis  GUS expression
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