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Terbium(3 +) as a probe of nucleic acids structure. Does it alter the DNA conformation in solution?
Authors:D Gersanovski  P Colson  C Houssier  E Fredericq
Institution:Laboratoire de Chimie Physique, Université de Liège, Sart-Tilman (B6), B 4000 Liège Belgium
Abstract:At low ionic strength, Tb3+ binding strongly alters the secondary structure of DNA. Circular dichroism and electro-optical techniques are more sensitive than fluorescence to study these alterations in double-stranded DNA, at low Tb3+/DNA phosphate (IP) ratios. Both techniques yield the following conclusion: as IP is increased, native and sonicated DNA undergo a transition from the B- to ψ-form, the latter being a compact structure characteristic of aggregated DNA. Our study of alkylated DNA establishes that the accessibility of N-7 guanine to Tb3+ is clearly required for structural alterations in an aggregated state to occur. The chelation of the phosphate group and of the N-7 guanine by Tb3+ simultaneously alters the geometry of the sugar-phosphate backbone and the stacking interaction between the bases in double-stranded DNA.
Keywords:DNA structure  Structural transition  Circular dichroism  Electric dichroism  To whom correspondence should be addressed  
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