Calculation errors of time-varying flux control coefficients obtained from elasticity coefficients by means of summation and connectivity theorems in metabolic control analysis |
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Authors: | Fumihide Shiraishi Kansuporn Sriyudthsak Yusuke Suzuki |
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Affiliation: | 2. Department of Computer Science, The University of Sheffield, Sheffield, United Kingdom;3. Institute for System Dynamics, University of Stuttgart, Stuttgart, Germany;4. Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield, United Kingdom;5. Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, The Netherlands |
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Abstract: | This paper investigates the accuracy of a matrix method proposed by other researchers to calculate time-varying flux control coefficients (dynamic FCCs) from elasticity coefficients by means of summation and connectivity theorems in the framework of metabolic control analysis. A mathematical model for the fed-batch penicillin V fermentation process is used as a case example for discussion. Calculated results reveal that this method produces significant calculation errors because the theorems are essentially valid only in steady state, although it may provide rough time-transient behaviors of FCCs. Strictly, therefore, dynamic FCCs should be directly calculated from the differential equations for metabolite concentrations and sensitivities. |
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