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The Genome Sequence of Leishmania (Leishmania) amazonensis: Functional Annotation and Extended Analysis of Gene Models
Authors:Fernando Real  Ramon Oliveira Vidal  Marcelo Falsarella Carazzolle  Jorge Maurício Costa Mondego  Gustavo Gilson Lacerda Costa  Roberto Hirochi Herai  Martin Würtele  Lucas Miguel de Carvalho  Renata Carmona e Ferreira  Renato Arruda Mortara  Clara Lucia Barbiéri  Piotr Mieczkowski  José Franco da Silveira  Marcelo Ribeiro da Silva Briones  Gon?alo Amarante Guimar?es Pereira  Diana Bahia
Abstract:
We present the sequencing and annotation of the Leishmania (Leishmania) amazonensis genome, an etiological agent of human cutaneous leishmaniasis in the Amazon region of Brazil. L. (L.) amazonensis shares features with Leishmania (L.) mexicana but also exhibits unique characteristics regarding geographical distribution and clinical manifestations of cutaneous lesions (e.g. borderline disseminated cutaneous leishmaniasis). Predicted genes were scored for orthologous gene families and conserved domains in comparison with other human pathogenic Leishmania spp. Carboxypeptidase, aminotransferase, and 3′-nucleotidase genes and ATPase, thioredoxin, and chaperone-related domains were represented more abundantly in L. (L.) amazonensis and L. (L.) mexicana species. Phylogenetic analysis revealed that these two species share groups of amastin surface proteins unique to the genus that could be related to specific features of disease outcomes and host cell interactions. Additionally, we describe a hypothetical hybrid interactome of potentially secreted L. (L.) amazonensis proteins and host proteins under the assumption that parasite factors mimic their mammalian counterparts. The model predicts an interaction between an L. (L.) amazonensis heat-shock protein and mammalian Toll-like receptor 9, which is implicated in important immune responses such as cytokine and nitric oxide production. The analysis presented here represents valuable information for future studies of leishmaniasis pathogenicity and treatment.
Keywords:genome   Leishmania amazonensis   interactome   amastin   heat-shock protein
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