Design and implementation of a domain specific language for phylogenetic inference |
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Authors: | Pontelli Enrico Ranjan Desh Gupta Gopal Milligan Brook |
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Affiliation: | Knowledge Representation, Logic, and Advanced Programming Laboratory, Department of Computer Science, New Mexico State University, Box 30001/CS, Las Cruces, NM 88003 USA. epontell@cs.nmsu.edu |
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Abstract: | Domain experts think and reason at a high level of abstraction when they solve problems in their domain of expertise. We present the design and motivation behind a domain specific language, called phi LOG, to enable biologists to program solutions to phylogenetic inference problems at a very high level of abstraction. The implementation infrastructure (interpreter, compiler, debugger) for the DSL is automatically obtained through a software engineering framework based on Denotational Semantics and Logic Programming. |
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