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Retracted: Screening of candidate genes and fine mapping of drought tolerance quantitative trait loci on chromosome 4 in rice (Oryza sativa L.) under drought stress
Authors:Yuan‐Yuan Nie  Lin Zhang  Yun‐Hua Wu  Hao‐Jie Liu  Wei‐Wei Mao  Juan Du  Hai‐Lin Xiu  Xiao‐Yu Wu  Xia Li  Yu‐Wei Yan  Guo‐Lan Liu  Hong‐Yan Liu  Song‐Ping Hu
Institution:1. College of Bioscience and Engineering, Jiangxi Agricultural University, Nanchang, China;2. Jiangxi Super‐rice Research and Development Center/National Engineering Laboratory for Rice, Nanchang, China;3. Department of Plant and Microbial Biology, UC Berkeley, Berkeley, California;4. Shanghai Agrobiological Gene Center, Shanghai, China
Abstract:Due to severe water resource shortage, genetics of and breeding for DT (drought tolerance) in rice (Oryza sativa L.) have become one of the hot research topics. Identification of grain yield QTLs (quantitative trait loci) directly related to the DT trait of rice can provide useful information for breeding new drought‐resistant and water‐saving rice varieties via marker‐assisted selection. A population of 105 advanced BILs (backcross introgression lines) derived from a cross between Zhenshan97B and IRAT109 in Zhenshan97B background were grown under drought stress in a field experiment and phenotypic traits were investigated. The results showed that in the target interval of RM273‐RM255 on chromosome 4, three main‐effect QTLs related to panicle length, panicle number, and spikelet number per panicle were identified (LOD logarithm of the odds] > 2.0). The panicle length‐related QTL had two loci located in the neighboring intervals of RM17308‐RM17305 and RM17349‐RM17190, which explained 18.80% and 20.42%, respectively, of the phenotypic variation, while the panicle number‐related QTL was identified in the interval of RM1354‐RM17308, explaining 11.47% of the phenotypic variation. As far as the spikelet number per panicle‐related QTL was concerned, it was found to be located in the interval of RM17308‐RM17305, which explained 28.08% of the phenotypic variation. Using the online Plant‐GE query system, a total of 13 matched ESTs (expressed sequence tags) were found in the target region, and of the 13 ESTs, 12 had corresponding predicted genes. For instance, the two ESTs CB096766 and CA765747 were corresponded to the same predicted gene LOC_Os04g46370, while the other four ESTs, CA754286, CB000011, CX056247, and CX056240, were corresponded to the same predicted gene LOC_Os04g46390.
Keywords:Candidate genes  drought stress  drought tolerance  fine mapping  quantitative trait loci  rice (Oryza sativa L  )
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