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Benefits of Collisional Cross Section Assisted Precursor Selection (caps-PASEF) for Cross-linking Mass Spectrometry
Authors:Barbara Steigenberger  Henk WP van den Toorn  Emiel Bijl  Jean-Franois Greisch  Oliver Rther  Markus Lubeck  Roland J Pieters  Albert JR Heck  Richard A Scheltema
Institution:1. Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands;2. Netherlands Proteomics Centre, Utrecht, The Netherlands;3. Bruker Daltonik GmbH, Bremen, Germany;4. Department of Chemical Biology & Drug Discovery, Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands
Abstract:
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  • Highlights
    • •Cross-linked peptides are physically separated from mono-linked peptides in the gas-phase by TIMS ion mobility.
    • •Development of a novel data acquisition routine that a-priori distinguishes cross-linked from mono-linked peptides called caps-PASEF.
    • •First application of PhoX-driven cross-linking mass spectrometry on the timsTOF Pro.
    • •Application of cross-linking mass spectrometry to medium to high complexity samples.
    Keywords:Mass spectrometry  protein cross-linking*  crosslinking  data evaluation  macromolecular complex analysis  separation technologies  ion mobility
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