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Kinetic analysis of a high-affinity antibody/antigen interaction performed by multiple Biacore users
Authors:Katsamba Phinikoula S  Navratilova Iva  Calderon-Cacia Maria  Fan Linsey  Thornton Kevin  Zhu Mingde  Bos Tim Vanden  Forte Carla  Friend Della  Laird-Offringa Ite  Tavares Gisele  Whatley John  Shi Ergang  Widom Angela  Lindquist Kevin C  Klakamp Scott  Drake Andrew  Bohmann David  Roell Marina  Rose Larry  Dorocke Jill  Roth Bruce  Luginbühl Béatrice  Myszka David G
Affiliation:Center for Biomolecular Interaction Analysis, School of Medicine, University of Utah, Salt Lake City, 84132, USA.
Abstract:
To explore the reliability of Biacore-based assays, 22 study participants measured the binding of prostate-specific antigen (PSA) to a monoclonal antibody (mAb). Each participant was provided with the same reagents and a detailed experimental protocol. The mAb was immobilized on the sensor chip at three different densities and a two-step assay was used to determine the kinetic and affinity parameters of the PSA/mAb complex. First, PSA was tested over a concentration range of 2.5-600 nM to obtain k(a) information. Second, to define the k(d) of this stable antigen/antibody complex accurately, the highest PSA concentration was retested with the dissociation phase of each binding cycle monitored for 1h. All participants collected data that could be analyzed to obtain kinetic parameters for the interaction. The association and the extended-dissociation data derived from the three antibody surfaces were globally fit using a simple 1:1 interaction model. The average k(a) and k(d) for the PSA/mAb interaction as calculated from the 22 analyses were (4.1+/-0.6) x 10(4) M(-1) s(-1) and (4.5+/-0.6) x 10(-5) s(-1), respectively. Overall, the experimental standard errors in the rate constants were only approximately 14%. Based on the kinetic rate constants, the affinity (K(D)) of the PSA/mAb interaction was 1.1+/-0.2 nM.
Keywords:Surface plasmon resonance   Protein-protein interactions   Antibody-antigen interactions   Molecular interactions
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