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A computational framework for gene regulatory network inference that combines multiple methods and datasets
Authors:Rita Gupta  Anna Stincone  Philipp Antczak  Sarah Durant  Roy Bicknell  Andreas Bikfalvi  Francesco Falciani
Affiliation:1.School of Biosciences, University of Birmingham,Birmingham,UK;2.Institute of Biomedical Research, Medical School, University of Birmingham,Birmingham,UK;3.INSERM E 0113, Molecular Angiogenesis Laboratory, Université de Bordeaux 1,Talence,France
Abstract:

Background  

Reverse engineering in systems biology entails inference of gene regulatory networks from observational data. This data typically include gene expression measurements of wild type and mutant cells in response to a given stimulus. It has been shown that when more than one type of experiment is used in the network inference process the accuracy is higher. Therefore the development of generally applicable and effective methodologies that embed multiple sources of information in a single computational framework is a worthwhile objective.
Keywords:
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