E-photosynthesis: web-based platform for modeling of complex photosynthetic processes |
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Authors: | Safránek David Cervený Jan Klement Matěj Pospíšilová Jana Brim Luboš Lazár Dušan Nedbal Ladislav |
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Affiliation: | a Systems Biology Laboratory, Faculty of Informatics Masaryk University, Botanická 68a, CZ-60200 Brno, Czech Republic b Institute of Systems Biology and Ecology, Academy of Sciences, Zámek 136, CZ-37333 Nové Hrady, Czech Republic c Photon Systems Instruments, Ltd., Kolá?kova 39, CZ-62100 Brno, Czech Republic d Laboratory of Biophysics, Faculty of Science, Palacký University, T?. Svobody 26, 771 46 Olomouc, Czech Republic |
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Abstract: | E-photosynthesis framework is a web-based platform for modeling and analysis of photosynthetic processes. Compared to its earlier version, the present platform employs advanced software methods and technologies to support an effective implementation of vastly diverse kinetic models of photosynthesis. We report on the first phase implementation of the tool new version and demonstrate the functionalities of model visualization, presentation of model components, rate constants, initial conditions and of model annotation. The demonstration also includes export of a model to the Systems Biology Markup Language format and remote numerical simulation of the model. |
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