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E-photosynthesis: web-based platform for modeling of complex photosynthetic processes
Authors:Safránek David  Cervený Jan  Klement Matěj  Pospíšilová Jana  Brim Luboš  Lazár Dušan  Nedbal Ladislav
Affiliation:a Systems Biology Laboratory, Faculty of Informatics Masaryk University, Botanická 68a, CZ-60200 Brno, Czech Republic
b Institute of Systems Biology and Ecology, Academy of Sciences, Zámek 136, CZ-37333 Nové Hrady, Czech Republic
c Photon Systems Instruments, Ltd., Kolá?kova 39, CZ-62100 Brno, Czech Republic
d Laboratory of Biophysics, Faculty of Science, Palacký University, T?. Svobody 26, 771 46 Olomouc, Czech Republic
Abstract:E-photosynthesis framework is a web-based platform for modeling and analysis of photosynthetic processes. Compared to its earlier version, the present platform employs advanced software methods and technologies to support an effective implementation of vastly diverse kinetic models of photosynthesis. We report on the first phase implementation of the tool new version and demonstrate the functionalities of model visualization, presentation of model components, rate constants, initial conditions and of model annotation. The demonstration also includes export of a model to the Systems Biology Markup Language format and remote numerical simulation of the model.
Keywords:
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