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Organ specificity and transcriptional control of metabolic routes revealed by expression QTL profiling of source-sink tissues in a segregating potato population
Authors:Bjorn Kloosterman  AM Anithakumari  Pierre-Yves Chibon  Marian Oortwijn  Gerard C van der Linden  Richard GF Visser  Christian WB Bachem
Affiliation:(1) Wageningen UR Plant Breeding, Wageningen University and Research Center, PO Box 386, 6700 AJ Wageningen, the Netherlands;(2) Graduate School Experimental Plant Sciences, Wageningen, The Netherlands;(3) Centre for BioSystems Genomics, P.O. Box 98, 6700 AA Wageningen, The Netherlands;(4) KeyGene N.V., P.O. Box 216, 6700 AE Wageningen, The Netherlands
Abstract:

Background  

With the completion of genome sequences belonging to some of the major crop plants, new challenges arise to utilize this data for crop improvement and increased food security. The field of genetical genomics has the potential to identify genes displaying heritable differential expression associated to important phenotypic traits. Here we describe the identification of expression QTLs (eQTLs) in two different potato tissues of a segregating potato population and query the potato genome sequence to differentiate between cis- and trans-acting eQTLs in relation to gene subfunctionalization.
Keywords:
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