Initial steps towards a production platform for DNA sequence analysis on the grid |
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| Authors: | Angela CM Luyf Barbera DC van Schaik Michel de Vries Frank Baas Antoine HC van Kampen Silvia D Olabarriaga |
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| Affiliation: | 1.Bioinformatics Laboratory, Department of Clinical Epidemiology, Biostatistics and Bioinformatics,Academic Medical Center,Amsterdam,the Netherlands;2.Virus Discovery Unit, Department of Medical Microbiology,Academic Medical Center,Amsterdam,the Netherlands;3.Department of Neurogenetics,Academic Medical Center,Amsterdam,the Netherlands;4.Biosystems Data Analysis, Swammerdam Institute for Life Science,University of Amsterdam,Amsterdam,The Netherlands;5.Netherlands Bioinformatics Centre,Nijmegen,the Netherlands |
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| Abstract: | Background Bioinformatics is confronted with a new data explosion due to the availability of high throughput DNA sequencers. Data storage and analysis becomes a problem on local servers, and therefore it is needed to switch to other IT infrastructures. Grid and workflow technology can help to handle the data more efficiently, as well as facilitate collaborations. However, interfaces to grids are often unfriendly to novice users. |
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