The carbohydrate-protein binding region in keratan sulfate from bovine cornea, structure of a major binding region oligosaccharide

Peptido-keratan sulfate from bovine cornea was degraded by a combination of desulfation, hydrazinolysis, nitrous acid deamination and NaB3H4 reduction. The tetrasaccharide fraction obtained by gel filtration was studied by degradation with specific exoglycosidases and methylation analysis. The existence of two different binding region oligosaccharide structures was established: The first structure contains one terminal fucose, two mannosine residues and N-acetylglucosamine at the reducing end. In the second structure one N-acetylglucosamine is bound to the protein backbone and substituted with branched 3,6-di-O-alpha-mannosyl-beta-mannose. Both terminal alpha-mannosine residues bear keratan sulfate chains in the 2-position.