Abstract: | Schoenoplectus americanus is a model organism for studying ecological and ecosystem responses of salt marsh plant communities to global climate change. Here we characterize 16 microsatellite loci in S. americanus to facilitate studies on the genetic basis of phenotypic responses to changing climate conditions such as elevated atmospheric carbon dioxide. Most loci also amplified in the morphologically similar sister species, Schoenoplectus pungens. Five loci exhibited species‐specific alleles or distinct allelic size distributions that discriminate S. americanus from S. pungens. |