Functional Diversity of Culturable Bacterial Communities in the Rhizosphere in Relation to Fine-root and Soil Parameters in Alder Stands on Forest, Abandoned Agricultural, and Oil-shale Mining Areas |
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| Authors: | K. Lõhmus M. Truu J. Truu I. Ostonen E. Kaar A. Vares V. Uri S. Alama A. Kanal |
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| Affiliation: | (1) Institute of Geography, University of Tartu, Tartu, Estonia;(2) Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia;(3) Department of Environmental Protection, Estonian Agricultural University, Tartu, Estonia;(4) Department of Silviculture, Estonian Agricultural University, Tartu, Estonia |
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| Abstract: | Grey alder (Alnus incana) and black alder (Alnus glutinosa) stands on forest land, abandoned agricultural, and reclaimed oil-shale mining areas were investigated with the aim of analysing the functional diversity and activity of microbial communities in the soil–root interface and in the bulk soil in relation to fine-root parameters, alder species, and soil type. Biolog Ecoplates were used to determine community-level physiological profiles (CLPP) of culturable bacteria in soil–root interface and bulk soil samples. CLPP were summarized as AWCD (average well color development, OD 48 h−1) and by Shannon diversity index, which varied between 4.3 and 4.6 for soil–root interface. The soil–root interface/bulk soil ratio of AWCD was estimated. Substrate-induced respiration (SIR) and basal respiration (BAS) of bulk soil samples were measured and metabolic quotient (Q = BAS/SIR) was calculated. SIR and Q varied from 0.24 to 2.89 mg C g−1 and from 0.12 to 0.51, respectively. Short-root morphological studies were carried out by WinRHIZOTM Pro 2003b; mean specific root area (SRA) varied for grey alder and black alder from 69 to 103 and from 54 to 155 m2 kg−1, respectively. The greatest differences between AWCD values of culturable bacterial communities in soil–root interface and bulk soil were found for the young alder stands on oil-shale mining spoil and on abandoned agricultural land. Soil–root interface/bulk soil AWCD ratio, ratio for Shannon diversity indices, and SRA were positively correlated. Foliar assimilation efficiency (FOE) was negatively correlated with soil–root interface/bulk soil AWCD ratio. The impact of soil and alder species on short-root morphology was significant; short-root tip volume and mass were greater for black alder than grey alder. For the investigated microbiological characteristics, no alder-species-related differences were revealed. |
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| Keywords: | Alnus glutinosa Alnus incana Biolog Ecoplates fine root morphology soil– root interface substrate-induced and basal respiration |
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