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Single-molecule imaging and manipulation of biomolecular machines and systems
Authors:Ryota Iino  Tatsuya Iida  Akihiko Nakamura  Ei-ichiro Saita  Huijuan You  Yasushi Sako
Institution:1. Okazaki Institute for Integrative Bioscience, Institute for Molecular Science, National Institutes of Natural Sciences, Japan;2. Department of Functional Molecular Science, School of Physical Sciences, The Graduate University for Advanced Studies (SOKENDAI), Japan;3. Information Processing Biology Unit, Okinawa Institute of Science and Technology Graduate University, Japan;4. School of Pharmacy, Tongji Medical College, Huazhong University of Science and Technology, China;5. Cellular Informatics Laboratory, RIKEN, Japan
Abstract:

Background

Biological molecular machines support various activities and behaviors of cells, such as energy production, signal transduction, growth, differentiation, and migration.

Scope of review

We provide an overview of single-molecule imaging methods involving both small and large probes used to monitor the dynamic motions of molecular machines in vitro (purified proteins) and in living cells, and single-molecule manipulation methods used to measure the forces, mechanical properties and responses of biomolecules. We also introduce several examples of single-molecule analysis, focusing primarily on motor proteins and signal transduction systems.

Major conclusions

Single-molecule analysis is a powerful approach to unveil the operational mechanisms both of individual molecular machines and of systems consisting of many molecular machines.

General significance

Quantitative, high-resolution single-molecule analyses of biomolecular systems at the various hierarchies of life will help to answer our fundamental question: “What is life?” This article is part of a Special Issue entitled "Biophysical Exploration of Dynamical Ordering of Biomolecular Systems" edited by Dr. Koichi Kato.
Keywords:ADP  adenosine diphosphate  ATP  adenosine triphosphate  AFM  atomic force microscopy  FRET  Förster resonance energy transfer  FCS  fluorescence (cross-) correlation spectroscopy  GFP  green fluorescent protein  G4  G-quadruplex  i  inorganic phosphate  iSCAT  interferometric scattering microscopy  ICS  image correlation spectroscopy  S/N  signal-to-noise  STED  stimulated emission depletion  TIR  total internal reflection  Single-molecule imaging  Single-molecule manipulation  Molecular machines  Motor proteins  Signal transduction
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