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1H, 15N and 13C NMR resonance assignment, secondary structure and global fold of the FMN-binding domain of human cytochrome P450
Authors:Igor Barsukov  Sandeep Modi  Lu-Yun Lian  Kong Hung Sze  Mark J.I. Paine  C. Roland Wolf  Gordon C.K. Roberts
Affiliation:(1) Department of Biochemistry and Biological NMR Centre, University of Leicester, Leicester, LE1 9HN, U.K;(2) Centre for Mechanisms of Human Toxicity, University of Leicester, Leicester, LE1 9HN, U.K;(3) Biomedical Research Centre, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, U.K
Abstract:The FMN-binding domain of human NADPH-cytochrome P450 reductase,corresponding to exons 3-;7, has been expressed at high level in anactive form and labelled with 13C and 15N. Mostof the backbone and aliphatic side-chain 1H, 15Nand 13C resonances have been assigned using heteronucleardouble- and triple-resonance methods, together with a semiautomaticassignment strategy. The secondary structure as estimated from the chemicalshift index and NOE connectivities consists of six agr-helices and fivebeta-strands. The global fold was deduced from the long-range NOEsunambiguously assigned in a 4D 13C-resolved HMQC-NOESY-HMQCspectrum. The fold is of the alternating agr/beta type, with the fivebeta-strands arranged into a parallel beta-sheet. The secondarystructure and global fold are very similar to those of the bacterialflavodoxins, but the FMN-binding domain has an extra short helix in place ofa loop, and an extra helix at the N-terminus (leading to the membrane anchordomain in the intact P450 reductase). The experimental constraints werecombined with homology modelling to obtain a structure of the FMN-bindingdomain satisfying the observed NOE constraints. Chemical shift comparisonsshowed that the effects of FMN binding and of FMN reduction are largelylocalised at the binding site.
Keywords:Cytochrome P450 reductase  Flavin mononucleotide  Triple resonance  Resonance assignment  Semiautomatic
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