A short-range endemic species from south-eastern Atlantic Rain Forest shows deep signature of historical events: phylogeography of harvestmen Acutisoma longipes (Arachnida: Opiliones)

The Brazilian Atlantic Rain Forest is amongst the most diverse biomes in the world, but the processes that shaped its biodiversity are still poorly understood. We used one mitochondrial and two nuclear markers to evaluate the phylogeographic patterns of the endemic harvestman Acutisoma longipes and its closely related species to investigate the biogeographic history of this biome. The results showed low intrapopulation diversity and strong population structure, suggesting poor dispersion amongst locations. Phylogenetic analyses pointed to three main mitochondrial lineages congruent with the geomorphology of the south-eastern region of Brazil (Serra do Mar, Serra da Mantiqueira, and interior plateau). These older divergences occurred in the middle-Neogene, suggesting that events in this period drove the diversification of the species, but Quaternary events also affected the populations locally. We detected some congruence between A. longipes demographic patterns and the areas of endemism delimited for harvestmen, suggesting that some regions of the distribution could have been more stable in the past (especially in Serra da Mantiqueira). Our findings corroborate that harvestmen are a suitable group for the study of ancient biogeographic events in the Atlantic Rain Forest, even at small-scale ranges. Acutisoma hamatum is here considered as a new junior synonym of A. longipes.     

Flavonoid diversity and endemism in Arnica subgenus Austromontana

Eighty-seven populations, representing eight species of Amica subgenus Austromontana, were examined for flavonoids. A total of 22 compounds, including simple and methylated flavone and flavonol glycosides as well as methylated aglycones, were isolated and identified. The two widespread species, A. cordifolia and its presumed early derivative A. latifolia, are ancestral species of the subgenus. From these two species, major evolutionary diversification within the subgenus has taken place largely in the Klamath region of Oregon and California, resulting in the formation of several rare, endemic species. These endemics are generally characterized by reduced flavonoid profiles and/or an increase in the number of methylated aglycones while, in contrast, the wider ranging species have few methylated aglycones and more glycosides. However, one species, A. viscosa, a rare volcanic endemic, exhibits the most elaborate and specialized flavonoid profile within the subgenus.     

Biotic diversification in the Guayana Highlands: a proposal

Until recently, the high degree of diversity and endemism of the Guayana Highlands was explained within the frame of the refuge theory. Although this hypothesis is unsupported by recent palaeoecological evidence, no new diversification model has been proposed. This paper is a proposal based on the latest palynological findings that indicate a downward biotic migration of c. 1100 m altitude during glacials, and the subsequent interglacial upward shift, in response to colder and warmer climates, respectively. Therefore, during glacials, biotic mixing is expected in the lowlands, thus promoting sympatric speciation, hybridization and polyploidy. At the mountaintops, unknown cold‐adapted taxa and páramo‐like(?) communities are expected to have occurred, and vicariance prevailed. In the interglacials, many taxa have had the opportunity for ascending to the mountains again, allowing genetic interchange among their slopes and summits, while others would have been adapted to lowlands. The interglacial highland communities, where vicariance still predominated, experienced some extinction owing to habitat loss by upland displacement. According to this model, the successive alternation of glacials and interglacials resulted in a net increase of diversity and endemism, favoured by the complex topography and habitat heterogeneity, which allowed high niche diversification. This model has some similarities with the Andean and Amazon modes of diversification, but the special topographical characteristics of the Guayana region made it different in other fundamental aspects. The Guayana Highlands would have acted as a ‘biodiversity pump’ for the surrounding inner and coastal lowlands, due to the repeated speciation and further spreading events, as a response to climate. Several working hypotheses are suggested in relation to the proposed model. The use of coordinated international multiproxy projects combining palaeoecology and genetic analysis of modern taxa is strongly encouraged for exploring these ideas.     

Environmental and human factors influencing rare plant local occurrence, extinction and persistence: a 115-year study in the Mediterranean region

Aim Assessing whether environmental and human factors influenced the spatial distribution and the dynamics of regionally rare plant species since the late nineteenth century, and whether these spatial and temporal patterns of rare species occurrences differ according to their chorology (level of endemism and biogeographic affinity). Location An area extending over 6250 km² in the French Mediterranean Region. Methods We used two botanical surveys achieved in 1886 and in 2001, and considered species rare if occurring in only one or two sites in the study area. Each rare species was assigned to a group of endemism level (restricted endemic, non‐endemic), and of biogeographic affinity (Mediterranean, South/Central European, Mountain, Eurosiberian). A 1 × 1 km grid was applied to the study zone. Generalized linear models were developed to study the spatial distribution and the fate of rare species occurrences (local extinction vs. local persistence between 1886 and 2001), as a function of environmental and human variables. Multivariate analyses were used to test whether the spatial distribution and the fate of rare species occurrences differed according to their chorology. Results In 2001, rare species as a whole tended to occur at higher altitude, in zones dominated by semi‐natural open habitats, and where cultivated area had decreased in the last 30 years. Between 1886 and 2001, rare species were the most prone to local extinction in zones where human population density, cultivated area and livestock density had increased the most. Between 1886 and 2001, rare species had a higher probability of local persistence in zones of high altitude and steep slope, on basic bedrocks and with low cultivated area. Rare species with Mountain and Eurosiberian affinities occurred in marginal habitats in the study region, i.e. on gneiss‐micaschist bedrocks and at high altitudes, whereas Mediterranean and South/Central European rare species occupied more varied environmental conditions. Between 1886 and 2001, Eurosiberian rare species showed high rates of local extinction whereas Mediterranean rare species had a significantly higher probability of local persistence. Restricted endemic species mostly occurred in zones of high slope, low human population density, and where cultivated area had decreased in the last 30 years. Occurrences of restricted endemics remained significantly stable between 1886 and 2001. Main conclusions Environmental and land‐use changes that occurred over the twentieth century in the Mediterranean Basin had significant impacts on the spatial distribution and on the long‐term dynamics of rare species occurrences. Urbanization and recent agriculture intensification, occurring mainly in coastal plains and littoral zones, caused most local extinctions of rare species from 1886 to 2001. Local populations of Eurosiberian species, which reach their range limits in marginal zones of the Mediterranean, also appear to be highly vulnerable. Conversely, most restricted endemic species occur in habitats with harsh topography and low human disturbance and have a higher potential of local persistence.     

A preliminary analysis of distribution patterns in a large, pantropical genus, Barleria L. (Acanthaceae)

Barleria L. (Acanthaceae) is a large, polymorphic, widespread genus of herbs and shrubs comprising about 300 species, occurring mainly in Africa and Asia but with one species, Barleria oenotheroides Dum.Cours., extending to the New World tropics. Recent completion of a monographic infra-generic classification of the genus (in which seven sections are recognised, and the names of four of these validated in this paper—see Appendix 1), has facilitated a comprehensive analysis of distribution patterns on a global scale. The richest representation of Barleria is in Africa where there are two centres of diversity, one in tropical East Africa (about eighty species) and the other in southern Africa (about seventy species). The number of species tails off rapidly to both the Far East and the West. Barleria shows a marked trans-Atlantic disjunction between West Africa and the Neotropics, with B. oenotheroides shared by these two regions. This type of disjunction, which is known in other genera of the family, cannot be adequately explained in Barleria on the basis of long-distance dispersal or past continental movements. There is a high degree of regional endemism (e.g. 75% for the Indian subcontinent) at both the species and sectional levels within this genus. The degree of similarity between regions is correspondingly low. The endemics in each region tend to belong to only one or a few of the sections. There are few truly widespread taxa within the genus. East and West Africa are the only regions in which all sections are represented. Sections Barleria and Prionitis C.B. Cl. are the most widespread in the genus; Sections Somalia (Oliv.) Lindau, Fissimura M. Balkwill and Stellatohirtae M. Balkwill are mainly restricted to Africa and Sections Chrysothrix M. Balkwill and Cavirostrata M. Balkwill are the most restricted, occurring mainly in India and Sri Lanka. On a local scale, many of the species show highly restricted, clumped distributions; this is apparently related to particular soil types and possibly to the short-distance, ballistic mode of seed dispersal. This account of the biogeography of Barleria is to be regarded as preliminary, as much taxonomic work at the species level remains to be done before a full-scale cladistic biogeographic account can be undertaken. Particular areas worthy of future investigation include establishing the centre of origin of the genus and investigating the basis for the high degree of endemism shown by many of the species.     

Rediscovery of Nebela ansata (Amoebozoa: Arcellinida) in eastern North America: biogeographical implications

Aim The question whether free‐living protists are generally cosmopolitan is currently a matter of debate. In this study we investigate the geographical distribution of a distinctive testate amoeba species, Nebela ansata, and use our data to assess the potential for highly restricted distribution patterns in some protist species. Location Global. Methods We analysed (1) 3400 testate amoeba publications from North America and other continents, (2) unpublished slides of the Penard Collection of the Natural History Museum, London, UK, and (3) 104 Sphagnum samples from eastern North America. Non‐metric multidimensional scaling (NMDS) was used to visualize the similarities in testate amoeba community composition among 1012 North American samples, including two communities that contained N. ansata. Results We rediscovered N. ansata at a site in New Jersey located close to its type locality, and in Nova Scotia. We also report the existence of an apparently unpublished museum specimen originally collected from New Jersey. Our extensive literature survey confirmed the presence of this species only in the temperate part of eastern North America. The NMDS revealed that communities with N. ansata were less similar to each other than to communities from other parts of North America, suggesting that favourable habitats for N. ansata occur in other Sphagnum‐dominated peatlands, a habitat type that has been extensively sampled in North America and elsewhere. Main conclusions These data provide an unusually convincing case of a free‐living microorganism with a very limited distribution range in the temperate part of eastern North America. The remarkably restricted distribution of N. ansata highlights the extent of our ignorance about the natural history of free‐living microorganisms, and raises questions about the lack of attention to microbial diversity in conservation biology.     

Biogeographic area relationships of lowland Neotropical rainforest based on raw distributions of vertebrate groups

Hypotheses of the historic biogeography of Neotropical anurans inhabiting lowland forests were generated using Parsimony Analysis of Endemicity. In order to establish comparisons with the biogeographical patterns of other vertebrates, previous cladistic analyses reported in the literature (for lizards and primates) were extended and reanalysed to match the geographical scope of the anuran analysis. Cladistic analysis of the distribution of 335 anuran species at 14 localities showed two regions that form a basal dichotomy: (1) Central America + Choco and (2) Amazon Basin + Brazilian Atlantic Forest. This result is interpreted as the first vicariance event that separated lowland Neotropical rainforests into Cis-Andean (east from the Andes) and Trans-Andean (west from the Andes) areas. Within the Cis-Andean localities, the earliest separation occurred between the Amazon Basin and the Brazilian Atlantic Forest. Within the Amazon Basin, three distinctive clusters are defined: (1) Belem, (2) Guianan Region, and (3) Upper Amazon Basin. Data sets on the distribution of anurans, lizards, and mammals have strong cladistic signal. Strong congruence exists among the area cladograms of anurans, lizards, and primates. All of them have, or at least did not conflict with: (1) a basal separation between Cis- and Trans-Andean regions, (2) a Central American clade, (3) the Choco Region is sister to the Central American clade, (4) an Amazon Basin clade, (5) an Upper Amazon Basin clade, and (6) a Guianan clade. The area cladograms are dichotomous and therefore do not support biogeographic theories that hypothesize simultaneous isolations of biotas in the Neotropics.     

Hybridization and karyotype variability of three endemic Fritillaria L. (Liliaceae) in Argolis Peninsula (Greece)

Abstract

The Argolis Peninsula covers the north-eastern part of Peloponnisos and is surrounded by the Gulf of Argosaronic. The area hosts three species of the genus Fritillaria: F. graeca, F. rhodocanakis and F. spetsiotica. Fritillaria graeca is a Greek endemic taxon and its distribution includes Peloponnisos, C & E Sterea Ellas, C Evia and in proximity to Sterea Ellas, Salamis and Kea islands, while the stenoendemic F. rhodocanakis and F. spetsiotica are mainly found on Idra and Spetses islands respectively. The last two taxa are included in the Red Data Book of Rare and Threatened Plants of Greece, while F. rhodocanakis is also included in the IUCN Red List. Hybridization among them is a common phenomenon in the areas where they coexist, leading to an array of morphologically and karyologically intermediate forms. The current study presents the taxa’s karyomorphometric analysis for the first time and reveals hybrids’ cytological variety, including differences in marker chromosomes, polyploidy and the number of B-chromosomes.     

Area and the rapid radiation of Hawaiian Bidens (Asteraceae)

Aim To estimate the rate of adaptive radiation of endemic Hawaiian Bidens and to compare their diversification rates with those of other plants in Hawaii and elsewhere with rapid rates of radiation. Location Hawaii. Methods Fifty‐nine samples representing all 19 Hawaiian species, six Hawaiian subspecies, two Hawaiian hybrids and an additional two Central American and two African Bidens species had their DNA extracted, amplified by polymerase chain reaction and sequenced for four chloroplast and two nuclear loci, resulting in a total of approximately 5400 base pairs per individual. Internal transcribed spacer sequences for additional outgroup taxa, including 13 non‐Hawaiian Bidens, were obtained from GenBank. Phylogenetic relationships were assessed by maximum likelihood and Bayesian inference. The age of the most recent common ancestor and diversification rates of Hawaiian Bidens were estimated using the methods of previously published studies to allow for direct comparison with other studies. Calculations were made on a per‐unit‐area basis. Results We estimate the age of the Hawaiian clade to be 1.3–3.1 million years old, with an estimated diversification rate of 0.3–2.3 species/million years and 4.8 × 10^?5 to 1.3 × 10^?4 species Myr^?1 km^?2. Bidens species are found in Europe, Africa, Asia and North and South America, but the Hawaiian species have greater diversity of growth form, floral morphology, dispersal mode and habitat type than observed in the rest of the genus world‐wide. Despite this diversity, we found little genetic differentiation among the Hawaiian species. This is similar to the results from other molecular studies on Hawaiian plant taxa, including others with great morphological variability (e.g. silverswords, lobeliads and mints). Main conclusions On a per‐unit‐area basis, Hawaiian Bidens have among the highest rates of speciation for plant radiations documented to date. The rapid diversification within such a small area was probably facilitated by the habitat diversity of the Hawaiian Islands and the adaptive loss of dispersal potential. Our findings point to the need to consider the spatial context of diversification – specifically, the relative scale of habitable area, environmental heterogeneity and dispersal ability – to understand the rate and extent of adaptive radiation.