Trait vs. phylogenetic diversity as predictors of competition and community composition in herbivorous marine amphipods

Field studies of community assembly patterns increasingly use phylogenetic relatedness as a surrogate for traits. Recent experiments appear to validate this approach by showing effects of correlated trait and phylogenetic distances on coexistence. However, traits governing resource use in animals are often labile. To test whether feeding trait or phylogenetic diversity can predict competition and production in communities of grazing amphipods, we manipulated both types of diversity independently in mesocosms. We found that increasing the feeding trait diversity of the community increased the number of species coexisting, reduced dominance and changed food availability. In contrast, phylogenetic diversity had no effect, suggesting that whatever additional ecological information it represents was not relevant in this context. Although community phylogenetic structure in the field may result from multiple traits with potential for phylogenetic signal, phylogenetic effects on species interactions in controlled experiments may depend on the lability of fewer key traits.     

Une espèce nouvelle du Kimméridgien du Portugal (Estremadura): Aulacomyella abadiensis nov. sp. (Bivalvia,Posidoniidae)

The Kimmeridgian Series situated at the North ofLisbon is included in the Portuguese Lusitanian basin. Its sandy clays pelagic facies with planctonic foraminifera contains a new species of bivalvia: Aulacomyella abadiensis related to A. neogeaeImlay from the Middle Kimmeridgian of Mexico and from the Kimmeridgian of Crimea. This species confirms the Middle Kimmeridgian.     

Le prétendu rhinocéros de Nouvelle Calédonie est un marsupial (Zygomaturus diahotensis nov. sp.): Solution d'une énigmeet conséquences paléogéographiques

The first mammalian remain ever found in NewCaledonia is an upper tooth found by golddiggers in the Plio-Pleistocene terrace from the Diahot river. This tooth, given to the Muséum national d'Histoire naturelle (Paris) in 1876, was determined as a rhinoceros tooth and then completely forgotten. Its detailed study shows that it belongs to Zygomaturus, a large marsupial diprotodontid genus whose story is rather complicated. The Diahot tooth represents a new species of Zygomaturus, Z. diahotensis nov. sp., close to Z. trilobus from the Australian Pleistocene. That kinship suggests a Plio-Pleistocene land connection between Australia and New Caledonia, whereas till now New Caledonia was supposed to be separated from Australia since the end of the Cretaceous, because of the total absence of indigenous mammals, fossil or recent, in New Caledonia. The latest geological studies in the East Pacific do not contradict our hypothesis.     

Dynamics and Phylogenetic Implications of MtDNA Control Region Sequences in New World Jays (Aves: Corvidae)

To study the evolution of mtDNA and the intergeneric relationships of New World Jays (Aves: Corvidae), we sequenced the entire mitochondrial DNA control region (CR) from 21 species representing all genera of New World jays, an Old World jay, crows, and a magpie. Using maximum likelihood methods, we found that both the transition/transversion ratio (κ) and among site rate variation (α) were higher in flanking domains I and II than in the conserved central domain and that the frequency of indels was highest in domain II. Estimates of κ and α were much more influenced by the density of taxon sampling than by alternative optimal tree topologies. We implemented a successive approximation method incorporating these parameters into phylogenetic analysis. In addition we compared our study in detail to a previous study using cytochrome b and morphology to examine the effect of taxon sampling, evolutionary rates of genes, and combined data on tree resolution. We found that the particular weighting scheme used had no effect on tree topology and little effect on tree robustness. Taxon sampling had a significant effect on tree robustness but little effect on the topology of the best tree. The CR data set differed nonsignificantly from the tree derived from the cytochrome b/morphological data set primarily in the placement of the genus Gymnorhinus, which is near the base of the CR tree. However, contrary to conventional taxonomy, the CR data set suggested that blue and black jays (Cyanocorax sensu lato) might be paraphyletic and that the brown jay Psilorhinus (=Cyanocorax) morio is the sister group to magpie jays (Calocitta), a phylogenetic hypothesis that is likely as parsimonious with regard to nonmolecular characters as monophyly of Cyanocorax. The CR tree also suggests that the common ancestor of NWJs was likely a cooperative breeder. Consistent with recent systematic theory, our data suggest that DNA sequences with high substitution rates such as the CR may nonetheless be useful in reconstructing relatively deep phylogenetic nodes in avian groups. Received: 10 November 1999 / Accepted: 16 March 2000     

Early ordovician reefs from Argentina: Stromatoporoid vs stromatolite origin

Summary Late Arenigian biohermal reef mounds and biostromes within the shallow-marine platform facies of the upper San Juan Formation of the Precordillera (Western Argentina) represent a new Early Ordovician reef type. The meter-sized reefs are dominated byZondarella communis n.g. n. sp. The new taxon is characterized by domical, bulbous and laminar morphotypes exhibiting growth layers and thin horizontal and vertical as well as intermingled skeletal elements included within different sets. The fossil maybe compared with stromatolites and stromatoporoids but an interpretation as primitive stromatoporoids is favoured.     

Planning an adaptive numerical classification

Summary While numerical methods of classification seek to strictly formalise one part of the classificatory process, a human classifier uses a variety of different approaches to obtain a satisfactory organisation of data. In this paper some means of increasing the flexibility of numerical methods are discussed, in particular the possible uses of the taxonomic hierarchy. It is first necessary to show that higher taxonomic units contain ecologically interesting information. Then, using a two parameter classification method a means of progressing from higher to lower taxonomic units, during analysis and in a data dependent manner, is outlined. A similar procedure is possible with nested samples. However, since the value of a classification resides in its ecological interpretation, an automatic classification requires some means of ascribing meanings to classes. While such a semantic analysis seems theoretically possible, its practical attainment presents considerable difficulties.Contribution to the Symposium on Plant species and plant communities, held at Nijmegen, 11–12 November 1976, on the occasion of the 60th birthday of Professor Victor Westhoff.     

A review of software tools for spell‐checking taxon names in vegetation databases

Correct spelling of taxon names in vegetation databases is a fundamental prerequisite for many data processing steps. However, manual detection and correction of spelling mistakes is inefficient, prone to errors and non‐reproducible, especially when scanning large databases. Here, I review six software tools that spell‐check taxon names in vegetation databases: (1) the Global Names Resolver, (2) the Interim Register of Marine and Nonmarine Genera, (3) the Taxonomic Name Resolution Service and R packages (4) Plantminer, (5) Taxonstand and (6) tpl. In particular, I test their capacity to spell‐check names across the taxonomic ranks and organism groups frequently encountered in vegetation data and challenge their ability to screen names from different geographic regions. Performance by software tools differed widely in these tests. Backed up by multiple reference lists, the Global Names Resolver emerged as the most versatile software tool. All software solutions currently suffer from some minor limitations, including an inability to spell‐check names of hybrid taxa. Furthermore, some spelling mistakes, by their nature, cannot be resolved unambiguously. Given these limitations, taxon names should be spell‐checked with software tools in a semi‐automatic rather than an automatic way.     

Towards a definition of a crop wild relative

Crop wild relatives are an important socio-economic resource that is currently being eroded or even extinguished through careless human activities. If the Conference of the Parties (COP) to the CBD 2010 Biodiversity Target of achieving a significant reduction in the current rate of loss is to be achieved, we must first define what crop wild relatives are and how their conservation might be prioritised. A definition of a crop wild relative is proposed and illustrated in the light of previous Gene Pool concept theory. Where crossing and genetic diversity information is unavailable, the Taxon Group concept is introduced to assist recognition of the degree of crop wild relative relatedness by using the existing taxonomic hierarchy.