Life history and age at maturity of an anadromous smelt, the eulachon Thaleichthys pacificus (Richardson)

Trace element and fork length ( L _F) frequency analyses of eulachon Thaleichthys pacificus otoliths were used to determine age at maturity and repeat spawning potential, two aspects of eulachon life history that are not known but are important for successful management of this species. The L _F-frequency analysis for ocean caught and spawning eulachon was used to estimate age at maturation. Two size classes of eulachon were caught in the ocean and spawning eulachon were consistently the largest fish indicating that spawners from mid-coast of British Columbia were 3 years old. Laser-ablation inductively-coupled plasma mass spectrometry (LA-ICP-MS) was also used to reconstruct the Ba:Ca and Sr:Ca molar ratios deposited spatially into the otolith to estimate spawner age for five populations of eulachon. Age at maturation differed among populations examined. Based on the seasonal fluctuations in Ba:Ca molar ratios caused by seasonal upwelling of deep waters, it was determined that more southerly populations spawned at a younger age than the northern populations examined. Southern populations of eulachon, Columbia River, Washington, U.S.A., spawn after 2 years. Eulachon from the Fraser, Kemano and Skeena Rivers in British Columbia, Canada, generally mature after 3 years. Some Skeena River eulachon and most of the eulachon from the Copper River, Alaska, U.S.A., matured after 4 years. In contrast to the Ba:Ca molar ratios in the otolith, Sr:Ca molar ratios maintained a relatively flat profile over the life of the eulachon. The lack of a change in Sr:Ca ratios within the otolith, the single size class of spawners across all systems and the single age class within most populations strongly suggest that eulachon in the present study are semelparous.     

Environmental DNA facilitates accurate,inexpensive, and multiyear population estimates of millions of anadromous fish

Although environmental DNA shed from an organism is now widely used for species detection in a wide variety of contexts, mobilizing environmental DNA for management requires estimation of population size and trends in addition to assessing presence or absence. However, the efficacy of environmental‐DNA‐based indices of abundance for long‐term population monitoring have not yet been assessed. Here we report on the relationship between six years of mark‐recapture population estimates for eulachon (Thaleichthys pacificus) and “eDNA rates” which are calculated from the product of stream flow and DNA concentration. Eulachon are a culturally and biologically important anadromous fish that have significantly declined in the southern part of their range but were historically rendered into oil and traded. Both the peak eDNA rate and the area under the curve of the daily eDNA rate were highly predictive of the mark‐recapture population estimate, explaining 84.96% and 92.53% of the deviance, respectively. Even in the absence of flow correction, the peak of the daily eDNA concentration explained an astonishing 89.53% while the area under the curve explained 90.74% of the deviance. These results support the use of eDNA to monitor eulachon population trends and represent a >80% cost savings over mark‐recapture, which could be further increased with automated water sampling, reduced replication, and focused temporal sampling. Due to its logistical ease and affordability, eDNA sampling can facilitate monitoring a larger number of rivers and in remote locations where mark‐recapture is infeasible.     

Population Structure and Stock Identification of Eulachon (Thaleichthys pacificus), an Anadromous Smelt, in the Pacific Northwest

The genetic structure of eulachon (Thaleichthys pacificus) populations was examined in an analysis of variation of 14 microsatellite loci representing approximately 1900 fish from 9 sites between the Columbia River and Cook Inlet, Alaska. Significant genetic differentiation occurred among the putative populations. The mean F_ST for all loci was 0.0046, and there was a significant correlation between population genetic differentiation (F_ST) and geographic distance. Simulated mixed-stock samples comprising populations from different regions suggested that variation at microsatellite loci provided reasonably accurate estimates of stock composition for potential fishery samples. Marine sampling indicated that immature eulachons from different rivers, during the 2 to 3 years of prespawning life in offshore marine waters, do not mix thoroughly. For eulachons captured incidentally in offshore trawl fisheries, there was a clear geographic cline in relative abundance of eulachons from different geographic areas. The sample from northern British Columbia was dominated by northern and central coastal populations of British Columbia, the sample from central British Columbia was composed of eulachons from all regions, and the sample from southern British Columbia was dominated by Columbia River and Fraser River populations. These results have implications for the management of trawl fisheries and conservation of spawning populations in some rivers where abundance is at historically low levels.     

OCCURRENCE, PHOTO-IDENTIFICATION AND PREY OF PACIFIC WHITE-SIDED DOLPHINS (LAGENORHYNCUS OBLIQUIDENS) IN THE BROUGHTON ARCHIPELAGO, CANADA 1984–1998

This study summarizes occurrence of Pacific white-sided dolphins ( Lagenorhyncus obliquidens ) in the Broughton Archipelago on the west coast of Canada, from October 1984 through December 1998. Dolphins were detected on 472 d. The annual percent of total occurrence rose from 0.4% in 1984 to 19% in 1994 and then declined to 2% in 1998. Seasonal occurrence peaked from 1 October through January. Dolphin group size ranged from 2 to 1,000; the most common range was 11-50. While unreported for the Broughton Archipelago prior to 1984, the species is represented by teeth distributed throughout the past 2,000 yr of First Nations midden sediment, suggesting sporadic long-term occurrence. Increased water temperature from the 1937–1984 mean of 8.6°C, to the 1985–1998 mean of 9.3°C and increased abundance of two fish populations in the study area are considered potential factors in the recent increase in occurrence. Of the 675 naturally marked dolphins that were photo-identified, 214 were resighted. A pair of dolphins was photographed swimming in tandem, fourteen months apart. Tight groups, of five or fewer extensively scarred dolphins with extremely falcate dorsal fins were seen within every aggregation of over 50 animals, suggesting the existence of all-male associations. Prey species were collected from 25 encounters with feeding dolphins; they included herring ( Clupea harengus ), capelin ( Mallotus villosus ), and Pacific sardine ( Sardinops sagax ). Predation on eulachon ( Thaleichthys pacificus ) is suspected. Unreported for the Broughton Archipelago, the capelin sampled in this study may belong to the Bering Sea population. Pacific sardines returned to commercial viability on the British Columbia coast in 1997 after a 60-yr population collapse. Dolphin frequency of occurrence declined following introduction of underwater acoustic deterrent devices into the study area.     

Population differentiation determined from putative neutral and divergent adaptive genetic markers in Eulachon (Thaleichthys pacificus,Osmeridae), an anadromous Pacific smelt

Twelve eulachon (Thaleichthys pacificus, Osmeridae) populations ranging from Cook Inlet, Alaska and along the west coast of North America to the Columbia River were examined by restriction‐site‐associated DNA (RAD) sequencing to elucidate patterns of neutral and adaptive variation in this high geneflow species. A total of 4104 single‐nucleotide polymorphisms (SNPs) were discovered across the genome, with 193 putatively adaptive SNPs as determined by F_ST outlier tests. Estimates of population structure in eulachon with the putatively adaptive SNPs were similar, but provided greater resolution of stocks compared with a putatively neutral panel of 3911 SNPs or previous estimates with 14 microsatellites. A cline of increasing measures of genetic diversity from south to north was found in the adaptive panel, but not in the neutral markers (SNPs or microsatellites). This may indicate divergent selective pressures in differing freshwater and marine environments between regional eulachon populations and that these adaptive diversity patterns not seen with neutral markers could be a consideration when determining genetic boundaries for conservation purposes. Estimates of effective population size (N_e) were similar with the neutral SNP panel and microsatellites and may be utilized to monitor population status for eulachon where census sizes are difficult to obtain. Greater differentiation with the panel of putatively adaptive SNPs provided higher individual assignment accuracy compared to the neutral panel or microsatellites for stock identification purposes. This study presents the first SNPs that have been developed for eulachon, and analyses with these markers highlighted the importance of integrating genome‐wide neutral and adaptive genetic variation for the applications of conservation and management.     

Shrinkage correction and length conversion equations for Theragra chalcogramma, Mallotus villosus and Thaleichthys pacificus

Preservation of walleye pollock Theragra chalcogramma, capelin Mallotus villosus and eulachon Thaleichthys pacificus by freezing decreased fork length ( L _F) up to 1·8, 5·6 and 2·7% and reduced mass by up to 8·4, 3·5 and 1·1%, respectively. Shrinkage of walleye pollock standard length ( L _S) was greater for fish in 95% ethanol v . 5% formalin and for fish in 10% formalin v . frozen. Equations describing the shrinkage and loss in mass for these species are presented as well as conversions between different length measurements ( L _S, L _F and total length, L _T) for fishes that were frozen.