An interaction index to predict turtle bycatch in a Mediterranean bottom trawl fishery

Incidental catch is the major threat to the survival of loggerhead turtles (Caretta caretta) in the Mediterranean and the main reason for their decline. More than 100,000 turtles are estimated to be caught annually due to fishing practices; 10–50% die. Bottom trawls are among the fishing gears exerting the worst impact on sea turtle populations, especially in the coastal waters of Tunisia and Libya, northern Adriatic Sea, the Mediterranean coastal areas of Turkey and Egypt, where the continental shelf is large and turtles in the demersal stage are commonly found also in winter. Seven adult-sized loggerhead turtles captured incidentally by bottom trawls in the central-northern Adriatic Sea and treated in rescue centres were tagged with satellite transmitters before release. In this paper Italian bottom trawl track data obtained from vessel monitoring systems (VMSs) were analysed by VMSbase R suite to identify the areas of maximum fishing effort in the Adriatic. These data were combined with satellite information on turtle distribution to provide an interaction index enabling prediction of potential trawl–turtle interaction hotspots and periods. The present pilot study can be considered as a risk-analysis approach directed at identifying the areas and times of possible trawling–turtle interactions in a Mediterranean trawl fishery. By identifying the areas and seasons at highest risk of turtle bycatch, the index here developed has the potential to provide key information to design and implement mitigation strategies. Vessel monitoring system is actually in force in several countries, therefore the approach here studied might have a worldwide application.     

Domestication of the Emblematic White Cheese-Making Fungus Penicillium camemberti and Its Diversification into Two Varieties

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A critical rebuttal of the proposed division of the genus Arcobacter into six genera using comparative genomic,phylogenetic, and phenotypic criteria

The proposal to restructure the genus Arcobacter into six distinct genera was critically examined using: comparative analyses of up to 80 Epsilonproteobacterial genome sequences (including 26 arcobacters); phylogenetic analyses of three housekeeping genes and also 342 core genes; and phenotypic criteria. Genome sequences were analysed with tools to calculate Percentage of Conserved Proteins, Average Amino-acid Identity, BLAST-based Average Nucleotide Identity, in silico DNA–DNA hybridisation values, genome-wide Average Nucleotide Identity, Alignment Fractions and G + C percentages. Genome analyses revealed the genus Arcobacter sensu lato to be relatively homogenous, and phylogenetic analyses clearly distinguished the group from other Epsilonproteobacteria. Genomic distinction of the genera proposed by Pérez-Cataluña et al. [2018] was not supported by any of the measures used and a subsequent risk of strain misidentification clearly identified. Similarly, phenotypic analyses supported the delineation of Arcobacter sensu lato but did not justify the position of the proposed novel genera. The present polyphasic taxonomic study strongly supports the continuance of the classification of “aerotolerant campylobacters” as Arcobacter and refutes the proposed genus-level subdivision of Pérez-Cataluña et al. [2018].     

Multivariate analyses of Canadian and Japanese populations ofGlycyphagus destructor (Schrank) (Acarina,Glycyphagidae)

Summary Two multivariate statistical procedures were used to determine the basic trends of morphologic and geographic variations between males of a common stored-grain mite,Glycyphagus destructor (Schrank) collected from Canada and Japan. All analyses were carried out on physical measurements of 25 morphological features. Three principal component analyses bases on the Canadian (50 specimens), Japanese (50 specimens) and the combined populations from the 2 countries (100 specimens) revealed that the first component, accounting for 40% of the variability in all 3 solutions represented a measure of the morphologic dimension of the body. The second component, which explained over 18% of the variability, is a measure of the leg dimension. Smaller clusters of variates characteristic of the population from each county were also evident. Discriminant analysis, performed with the Canadian and Japanese populations, identified the variates that differed between the 2 populations and provided an approximate appraisal of interrelations. The general conclusion based on these analyses is that the Canadian and the Japanese populations are morphologically distinct. The difference is most evident in the diameters of genu 2, lengths of the sensory seta W_I, lengths of the body, and the distances between the vertical external setae. Contribution No. 446, from Research Station, Canada Department of Agriculture, Winnipeg, Manitoba, Canada.     

Reproductive variation and the egg size-clutch size trade-off within and among populations of painted turtles (Chrysemys picta bellii)

Interpopulation variation in egg size, clutch size and clutch mass was studied 3 years in four populations of painted turtles (Chrysemys picta bellii) from western Nebraska. Body size varied among all populations and was larger in two large (56–110 ha), sandhills lake populations than in two populations in smaller habitats (1.5–3.6 ha) of the Platte River floodplain. Reproductive parameters (egg mass, clutch mass, and clutch size) generally increased with maternal body size within populations. Clutch wet and dry mass varied among populations but largely as a function of maternal body size. Clutch size was largest in the sandhills lake populations, both absolutely and relative to maternal body size. Egg mass was smallest in the sandhills lakes and varied annually in one population. Over all populations, an egg sizeclutch size trade-off was detected (a negative correlation between egg mass and clutch size) after statistically removing maternal body size effects. Egg wet mass and clutch size were negatively correlated over all years within the sandhills populations and in some years in three populations. Although egg size varied within populations, egg size and clutch size covaried as expected by optimal offspring size models. Thus, patterns of egg size variation should be interpreted in the context of proximate or adaptive maternal body size and temporal effects. Comparisons among populations suggest that large egg size relative to maternal body size may occur when juvenile growth potential is poor and mean maternal body size is small.     

青皮核桃采后病害生防菌贝莱斯芽胞杆菌XRD006全基因组分析及防治效果研究

【目的】探究生防菌贝莱斯芽胞杆菌(Bacillus velezensis) XRD006对青皮核桃采后病害的生防能力及其贮藏保鲜效果,解析菌株的基因特性和次级代谢产物,了解菌株的抑菌机制。【方法】通过抑菌试验确定XRD006对青皮核桃采后病原菌的抑制能力。利用活体抑菌及贮藏试验探究生防菌对青皮核桃采后病原菌的抑制能力及对青皮核桃贮藏品质的影响。以全基因组测序了解菌株XRD006的基因组特征及潜在抑菌相关基因;利用antiSMASH软件预测XRD006的次级代谢产物;结合比较基因组学分析XRD006和贝莱斯芽胞杆菌标准株FZB42、SQR9之间的共线性关系和次级代谢产物基因簇差异。利用高效液相色谱(high performance liquid chromatography,HPLC)和质谱鉴定XRD006次级代谢产物并通过牛津杯法测定其抑菌能力。【结果】抑菌试验表明菌株XRD006对青皮核桃采后病原菌隐秘刺盘孢(Colletotrichum aenigma)、暹罗炭疽菌(Colletotrichum siamense)、葡萄座腔菌(Botryosphaeria dothidea)和藤仓...