Engineering of zinc finger and MHC motifs to locked-in tertiary folds

The assembly of helical and -sheet peptide blocks containing reactive chain ends results inhighly branched chain architectures (locked-in folds) mimicking native tertiary structures.This molecular kit strategy allows to bypass the protein folding problem in protein de novodesign and gives access to protein mimetics of high thermodynamic stability. The validity ofthis concept is exemplified for the design and synthesis of locked-in folds mimicking the zincfinger and MHC folding motifs.     

Geographic Tools for Eradication Programs of Insular Non-native Mammals

Non-native mammals are major drivers of ecosystem change and biodiversity loss; this is especially apparent on islands. However, techniques exist to remove non-native mammals, providing a powerful conservation tool. Conservation practitioners are now targeting larger islands for restoration. Leveraging existing and developing new techniques and technologies will prove critical to successful eradications on large islands. Using the removal of introduced goats (Capra hircus) from Santiago Island, Galápagos as a case study, we present a suite of Geographic Information System (GIS) tools that aid island conservation actions. GIS tools were incorporated into the three phases of the eradication campaign: planning, hunting, and monitoring. Further, these tools were adopted for three eradication techniques: ground-based hunting, aerial hunting by helicopter, and Judas goats. These geographic approaches provide a foundation for statistical, spatial, and economic analyses that should increase the capability and efficiency of removal campaigns. Given limited conservation funds and the dire status of many insular species, efficiently removing non-native mammals from islands is of paramount global conservation importance.     

Propagule pressure governs establishment of an invasive herb

The success of plant invasions may be limited by the availability of propagules and/or of suitable microsites, with microsite availability being affected by, for example, disturbance and interspecific competition. A mechanistic understanding of the contributions of propagule pressure and microsite limitation to plant invasions is therefore required to minimise future invasions. Here, we investigated the relative roles of propagule pressure, the availability of microsites, and their interaction on the establishment of an invasive herb, Lupinus polyphyllus, in two geographic regions representing different climate and growth conditions in Finland (a more productive southern region and a harsher central region). We carried out a field experiment in 14 L. polyphyllus populations, in which we manipulated both propagule pressure and disturbance. In a complementary greenhouse experiment, we manipulated propagule pressure and interspecific competition. Seedling establishment of L. polyphyllus was higher in the more productive southern region than in the harsher central region. The number of L. polyphyllus seedlings increased with increasing propagule pressure regardless of disturbance or interspecific competition. However, the number of L. polyphyllus seedlings per sown seed (relative establishment) tended to decrease with increasing propagule pressure, indicating that the positive effect of propagule pressure on early invasion is partially counteracted by density-dependent mortality at high seed densities. Our results highlight the dominant role of propagule pressure over disturbance and interspecific competition in the establishment of L. polyphyllus, suggesting that the early stage of invasion is limited by the availability of propagules rather than the availability of suitable microsites.     

A null model test of Floristic Quality Assessment: Are plant species’ Coefficients of Conservatism valid?

Floristic Quality Assessment (FQA) was developed as a tool for quantifying the conservation value of natural areas based on their plant species composition and richness. Floristic Quality Assessment is based on Coefficients of Conservatism (C values) assigned to each plant species in a region or state. Each species i, is assigned a value C_i, on a scale of 0–10 by expert botanists, based on its fidelity to undegraded natural areas. A criticism of Floristic Quality Assessment is the subjective nature of these C values. Our objective was to determine if C values of individual species are indicative of the C values of species with which they co-occur. If subjectively assigned species’ C values carry meaningful information about plant assemblages and the conservation value of particular habitats, then individual species should tend to co-occur with species of similar C. We tested this hypothesis using occurrences of 1014 species in 388 forests and wetlands across Illinois, USA. Using a null model approach, we found that species co-occurred with species of similar C far more often than would be expected by chance; affirming the predictive ability of subjectively assigned C values. Furthermore, we quantified the extent to which each species was under- or overvalued relative to its co-occurring species assemblages to assess if any species C values were mis-assigned. Woody plants and perennial herbs, as groups, were undervalued as ecological indicators, i.e. their C values were too low. Several non-native species, which, by convention, are assigned a C of zero, were over- or under-valued relative to native species with a C of zero. Based on species occurrences across hundreds of sites, our results indicated that, despite their subjective basis, C values carry considerable ecological information, such that a given species can be used to predict the C values of its co-occurring assemblage. However, some species C values appeared less accurate than others. Our methodological approach could be applied in other states or regions to validate and refine C value assignments.     

Predatory behavior and preference of a successful invader, the mud crab Dyspanopeus sayi (Panopeidae), on its bivalve prey

Predator-prey relationships between the panopeid crab, Dyspanopeus sayi, and the mytilid, Musculista senhousia, were investigated. Through laboratory experiments, prey-handling behavior, prey size selection, predator foraging behavior and preferences for two types of prey (M. senhousia and the Manila clam Ruditapes philippinarum) were assessed. Handling time differed significantly with respect to the three prey sizes offered (small: 15.0-20.0 mm shell length, SL; medium: 20.1-25.0 mm SL; and large: 25.1-30.0 mm SL); mud crabs were more efficient in predating medium-small than large prey. Although differences in prey profitability were not evident, D. sayi exhibited a marked reluctance to feed on larger-sized prey whilst smaller, more easily predated mussels were available. Size selection may be the result of a mechanical process in which encountered prey are attacked but rejected if they remain unbroken after a certain number of opening attempts. D. sayi exhibited inverse density-dependent foraging. A significant higher mortality of prey was evident at low prey density. Thus, at low predator density, the D. sayi-M. senhousia interaction was a destabilizing type II functional response. Interference responses affected the magnitude of predation intensity by D. sayi on M. senhousia, since as the density of foraging crabs increased, their foraging success fell. At high density (4 crabs tank⁻¹), crabs engaged in a high amount of agonistic activity when encountering a conspecific specimen, greatly diminished prey mortality. Finally, presenting two types of prey, Manila clam juveniles were poorly predated by mud crabs, which focused their predation mostly on M. senhousia. It is hypothesized that, when more accessible prey is available, mud crabs will have a minimal predatory impact on commercial R. philippinarum juvenile stocks.     

Engineering of zinc finger and MHC motifs to locked-in tertiary folds

Summary The assembly of helical and β-sheet peptide blocks containing reactive chain ends results in highly branched chain architectures (‘locked-in folds’) mimicking native tertiary structures. This molecular kit strategy allows to bypass the protein folding problem in protein de novo design and gives access to protein mimetics of high thermodynamic stability. The validity of this concept is exemplified for the design and synthesis of locked-in folds mimicking the zinc finger and MHC folding motifs.     

An updated inventory of the non-native flora of Sardinia (Italy)

We provide an updated inventory of the non-native flora of the Italian island of Sardinia, including accepted names, family, synonyms, biological form, fruit type, introduction pathway and native origin. This inventory was performed by reviewing the available literature and conducting dedicated field surveys across the entire island. The inventory catalogues 931 non-native taxa, including 31 cryptogenic species, 901 species, 14 subspecies, 13 varieties, two forms and one cultivar. We utilised the position on the introduction–invasion continuum concept and meta-population criterion to further label each species. Based on these frameworks, the non-native flora of Sardinia can be divided into 274 casual, 169 naturalised, 19 invasive, 440 exclusively planted and 29 unobserved after 1950. There are 204 archaeophytes and 727 neophytes. The majority of the non-native species (791) were introduced to the island voluntarily, and 140 species were introduced accidentally. The present inventory identifies 72 additional non-native taxa not previously reported in the literature.     

Harmonia axyridis in Europe: spread and distribution of a non-native coccinellid

Native to Asia, Harmonia axyridis (Pallas) (Coleoptera: Coccinellidae) is considered an invasive alien ladybird in Europe and North America, where it was widely introduced as a biological control agent of aphids and coccids. In Europe, H. axyridis was sold by various biological control companies from 1995 in France, Belgium and the Netherlands, and was also intentionally released in at least nine other countries. It has spread very rapidly, particularly since 2002, and is now regarded as established in thirteen European countries. The established range extends from Denmark in the north to southern France in the south, and from Czech Republic in the east to Great Britain in the west. In this paper we map the spread and distribution of H. axyridis in Europe, and examine the situation on a country-by-country basis. We report first records of the species in five countries; Spain, Sweden, Denmark, Czech Republic and Italy; and first evidence of H. axyridis establishment in the latter three countries. Despite releases of H. axyridis in Portugal, Spain and Greece, there is little evidence of establishment in southern Europe. It is predicted that the spread and increase within Europe will continue and that H. axyridis will become one of the most widely distributed coccinellids in the continent.     

Identifying indicator plant species of habitat quality and invasibility as a guide for peri-urban forest management

A floristic survey has been carried out in a peri-urban forest, the Sonian Forest in Brussels, to identify indicator plant species in the herbaceous layer, which could be used as an aid within the framework of a more sustainable management of the forest. Three hundred and seventy two (372) taxa have been identified, 33 of which are non-native (i.e. non-indigenous species regarding the study area, whether invasive or not). Criteria of habitat quality that have been chosen are the species richness, the commonness of the habitat, based on constitutive species, and its invasibility (vulnerability for invasion). On the basis of a comparison of the value of these criteria when each considered (potential indicator) species is present or not, 17 species have been recognised as reliable indicators of at least one of these three criteria. In particular, vegetation types containing either Anthriscus sylvestris, Galeopsis tetrahit or Senecio ovatus were found to be more susceptible to invasion than other habitats. The way to how the predictability of invasions might be effectively used as a management tool is discussed. Furthermore, we found a positive significant correlation (Bonferroni corrected probabilities) between the species richness and luminosity factor (derived from Ellenberg's indices), and the proportion of grassland and wetland species. The species richness was significantly negatively correlated with the proportion of woodland species. An increase in commonness was significantly correlated with a decrease in the proportion of geophytes. The usefulness of these results as an ecological basis for forest management is discussed.