使用哈迪-温伯格不平衡检验来检测多个标记-疾病关联(英文)

多位点单体型的可用性为疾病易感位点(DSL)的遗传分析提供了有价值的工具.DSL定位可以通过检测患病个体中一个标记位点的哈迪-温伯格不平衡(HWD)来实现.本文拓展了HWD检验到多个标记位点对DSL进行单体型关联分析.我们调查了HWD检验的统计功效并与常用的x~2统计量进行比较.结果表明HWD检验具有高的功效且比常用的x~2统计量的功效高.     

喀斯特地区农村劳动力转移对生态恢复的影响及其区域差异——基于酉阳和沿河的农户调查数据

喀斯特地区的生态恢复对于促进国土空间的生态修复、实现区域生态安全具有重要意义。基于酉阳县和沿河县的383份农户调查数据，从微观的农户尺度运用Tobit模型分析喀斯特地区农村劳动力转移对生态恢复的影响，并关注其对酉阳县和沿河县生态恢复的影响差异。研究结果表明：①研究区劳动力转移现象明显，47.67%的农村劳动力发生了转移；②研究区生态恢复情况总体较好，酉阳县的生态恢复好于沿河县；③农村劳动力转移通过农业劳动力的流失效应和非农收入的替代效应促进了喀斯特地区的生态恢复；④劳动力转移的程度不同，对生态恢复的作用强度也不同。沿河相对滞后的劳动力转移程度，使得其生态恢复稍弱于酉阳。为促进喀斯特地区生态恢复，政府应有序引导农村劳动力向非农就业转移，提高转移农户的非农化程度。     

小叶锦鸡儿灌丛化对典型草原群落结构与生态系统功能的影响

草原灌丛化是全球干旱半干旱地区面临的重要生态问题。灌丛化对草原生态系统结构与功能的影响较为复杂, 有待于在更广泛的区域开展研究。该研究在内蒙古锡林郭勒典型草原选择轻度、中度和重度灌丛化草地, 通过群落调查, 结合植物功能性状和土壤理化性质观测, 研究了小叶锦鸡儿(Caragana microphylla)灌丛化对草原群落结构(物种多样性、功能多样性和功能群组成)和生态系统功能(初级生产力、植被和土壤养分库)的影响。结果表明: 1)不同程度灌丛化草地的物种丰富度、功能性状多样性和群落加权性状平均值差异显著, 其中, 中度灌丛化草地的物种多样性和功能多样性较高, 表明一定程度的灌丛化有利于生物多样性维持。2)重度灌丛化草地的地上净初级生产力(ANPP)显著高于轻度和中度灌丛化草地, 其原因主要是随着灌丛化程度加剧, 群落内一/二年生草本植物显著增加, 而多年生禾草和多年生杂类草显著减少。三个灌丛化草地的植被叶片和土壤碳、氮库差异均不显著。3)灌丛化对草原生态系统功能包括ANPP、植被和土壤养分库均没有直接的影响, 而是通过影响功能群组成、土壤理化性质和功能多样性, 间接地影响生态系统功能; 灌丛化导致功能群发生替代和土壤旱碱化是最重要的生物和非生物因素。     

跨膜转录因子Nrf1的生物学功能研究进展*

跨膜转录因子Nrf1是CNC-bZIP家族中的重要成员,在维持细胞内氧化还原平衡、蛋白质稳态、内质网与线粒体稳定等功能中具有重要作用.在小鼠不同的组织器官中敲除Nrf1后会导致多种疾病,如非酒精性脂肪肝、神经退行性疾病、糖尿病等.近几年来,随着多种动物模型的运用及临床上的发现,Nrf1的新功能逐渐被揭示,尤其是参与棕色脂肪组织生热适应(冷适应)、胆固醇代谢、糖代谢、内质网应激以及先天性去糖基化疾病发生等过程.因此,为更好地理解Nrf1的作用,本文对其生物学功能进行了简要综述.     

Physical Constraint Finite Element Model for Medical Image Registration

Due to being derived from linear assumption, most elastic body based non-rigid image registration algorithms are facing challenges for soft tissues with complex nonlinear behavior and with large deformations. To take into account the geometric nonlinearity of soft tissues, we propose a registration algorithm on the basis of Newtonian differential equation. The material behavior of soft tissues is modeled as St. Venant-Kirchhoff elasticity, and the nonlinearity of the continuum represents the quadratic term of the deformation gradient under the Green- St.Venant strain. In our algorithm, the elastic force is formulated as the derivative of the deformation energy with respect to the nodal displacement vectors of the finite element; the external force is determined by the registration similarity gradient flow which drives the floating image deforming to the equilibrium condition. We compared our approach to three other models: 1) the conventional linear elastic finite element model (FEM); 2) the dynamic elastic FEM; 3) the robust block matching (RBM) method. The registration accuracy was measured using three similarities: MSD (Mean Square Difference), NC (Normalized Correlation) and NMI (Normalized Mutual Information), and was also measured using the mean and max distance between the ground seeds and corresponding ones after registration. We validated our method on 60 image pairs including 30 medical image pairs with artificial deformation and 30 clinical image pairs for both the chest chemotherapy treatment in different periods and brain MRI normalization. Our method achieved a distance error of 0.320±0.138 mm in x direction and 0.326±0.111 mm in y direction, MSD of 41.96±13.74, NC of 0.9958±0.0019, NMI of 1.2962±0.0114 for images with large artificial deformations; and average NC of 0.9622±0.008 and NMI of 1.2764±0.0089 for the real clinical cases. Student’s t-test demonstrated that our model statistically outperformed the other methods in comparison (p-values <0.05).     

追溯山茱萸科植物的性状进化和生物地理学历史——方法选择的影响?

This study compares results on reconstructing the ancestral state of characters and ancestral areas of distribution in Cornaceae to gain insights into the impact of using different analytical methods. Ancestral character state reconstructions were compared among three methods (parsimony, maximum likelihood, and stochastic character mapping) using MESQUITE and a full Bayesian method in BAYESTRAITS and inferences of ancestral area distribution were compared between the parsimony-based dispersal-vicariance analysis (DIVA) and a newly developed maximum likelihood (ML) method. Results indicated that among the six inflorescence and fruit characters examined, "perfect" binary characters (no homoplasy, no polymorphism within terminals, and no missing data) are little affected by choice of method, while homoplasious characters and missing data are sensitive to methods used. Ancestral areas at deep nodes of the phylogeny are substantially different between DIVA and ML and strikingly different between analyses including and excluding fossils at three deepest nodes. These results, while raising caution in making conclusions on trait evolution and historical biogeography using conventional methods, demonstrate a limitation in our current understanding of character evolution and biogeography. The biogeographic history favored by the ML analyses including fossils suggested the origin and early radiation of Cornus likely occurred in the late Cretaceous and earliest Tertiary in Europe and intercontinental disjunctions in three lineages involved movements across the North Atlantic Land Bridge (BLB) in the early and mid Tertiary. This result is congruent with the role of NALB for post-Eocene migration and in connecting tropical floras in North America and Africa, and in eastern Asia and South America. However, alternative hypotheses with an origin in eastern Asia and early Trans-Beringia migrations of the genus cannot be ruled out.     

A new species of Selaginella from Hainan Island, China, with a key to the Hainan species

Selaginella hainanensis X.C.Zhang & Noot. sp. nov. , a new species from Hainan Island, South China, is described and illustrated. Diagnostic notes and a key to the species distributed in Hainan are also provided.  © 2005 The Linnean Society of London, Botanical Journal of the Linnean Society , 2005, 148 , 323–327.