Complete mitochondrial genome of <Emphasis Type="Italic">Otis tarda</Emphasis> (Gruiformes: Otididae) and phylogeny of Gruiformes inferred from mitochondrial DNA sequences

The complete nucleotide sequence of mitochondrial genome of the Great bustard (Otis tarda) was determined by using polymerase chain reaction (PCR) method. The genome is 16,849 bp in size, containing 13 protein-coding, 2 ribosomal and 22 transfer RNA genes. Sequences of the tRNA genes can be folded into canonical cloverleaf secondary structure except for tRNA-Cys and tRNA-Ser (AGY), which lose “DHU” arm. Sequence analysis showed that the O. tarda mitochondrial control region (mtCR) contained many elements in common with other avian mtCRs. A microsatellite repeat was found in the 3′-peripheral domain of the O. tarda mtCR. Based on the mitochondrial DNA sequences of 12S rRNA, 16S rRNA and tRNA-Val, a phylogenetic study of Gruiformes was performed. The result showed that Otididae was a sister group to “core Gruiformes” and Charadriiformes with strong support (97% posterior probability values) in Bayesian analysis. The taxonomic status of Rhynochetidae, Mesitornithidae, Pedionomidae and Turnicidae that traditionally belonged to Gruiformes was also discussed in this paper.     

噬菌体抗体库技术

噬菌体抗体库技术是指从人外周血、脾或骨髓淋巴细胞提取总RNA,利用逆转录-多聚酶链反应（RT-PCR）方法扩增抗体的全套可变区基因,通过噬菌体表面展示技术,把抗体Fab段或单链抗体表达在噬菌体表面,构建人源抗体库.噬菌体抗体将基因型（genotype）和表型（phenotype）统一于一体,将选择能力和扩增能力偶联起来,具有强大的筛选能力,能够在体外模拟体内的抗体生成过程,使抗体工程技术进入了一个新的时代.     

Niche Partition of Bacteriovorax Operational Taxonomic Units Along Salinity and Temporal Gradients in the Chesapeake Bay Reveals Distinct Estuarine Strains

The predatory Bacteriovorax are Gram-negative bacteria ubiquitous in saltwater systems that prey upon other Gram-negative bacteria in a similar manner to the related genus Bdellovibrio. Among the phylogenetically defined clusters of Bacteriovorax, cluster V has only been isolated from estuaries suggesting that it may be a distinct estuarine phylotype. To assess this hypothesis, the spatial and temporal distribution of cluster V and other Bacteriovorax phylogenetic assemblages along the salinity gradient of Chesapeake Bay were determined. Cluster V was expected to be found in significantly greater numbers in low to moderate salinity waters compared to high salinity areas. The analyses of water and sediment samples from sites in the bay revealed cluster V to be present at the lower salinity and not high salinity sites, consistent with it being an estuarine phylotype. Cluster IV had a similar distribution pattern and may also be specifically adapted to estuaries. While the distribution of clusters V and IV were similar for salinity, they were distinct on temperature gradients, being found in cooler and in warmer temperatures, respectively. The differentiation of phylotype populations along the salinity and temporal gradients in Chesapeake Bay revealed distinct niches inhabited by different phylotypes of Bacteriovorax and unique estuarine phylotypes.     

Determinants of 14-3-3σ Protein Dimerization and Function in Drug and Radiation Resistance

Many proteins exist and function as homodimers. Understanding the detailed mechanism driving the homodimerization is important and will impact future studies targeting the “undruggable” oncogenic protein dimers. In this study, we used 14-3-3σ as a model homodimeric protein and performed a systematic investigation of the potential roles of amino acid residues in the interface for homodimerization. Unlike other members of the conserved 14-3-3 protein family, 14-3-3σ prefers to form a homodimer with two subareas in the dimeric interface that has 180° symmetry. We found that both subareas of the dimeric interface are required to maintain full dimerization activity. Although the interfacial hydrophobic core residues Leu¹² and Tyr⁸⁴ play important roles in 14-3-3σ dimerization, the non-core residue Phe²⁵ appears to be more important in controlling 14-3-3σ dimerization activity. Interestingly, a similar non-core residue (Val⁸¹) is less important than Phe²⁵ in contributing to 14-3-3σ dimerization. Furthermore, dissociating dimeric 14-3-3σ into monomers by mutating the Leu¹², Phe²⁵, or Tyr⁸⁴ dimerization residue individually diminished the function of 14-3-3σ in resisting drug-induced apoptosis and in arresting cells at G₂/M phase in response to DNA-damaging treatment. Thus, dimerization appears to be required for the function of 14-3-3σ.     

Comparison of the Efficiency of Banna Miniature Inbred Pig Somatic Cell Nuclear Transfer among Different Donor Cells

Somatic cell nuclear transfer (SCNT) is an important method of breeding quality varieties, expanding groups, and preserving endangered species. However, the viability of SCNT embryos is poor, and the cloned rate of animal production is low in pig. This study aims to investigate the gene function and establish a disease model of Banna miniature inbred pig. SCNT with donor cells derived from fetal, newborn, and adult fibroblasts was performed, and the cloning efficiencies among the donor cells were compared. The results showed that the cleavage and blastocyst formation rates did not significantly differ between the reconstructed embryos derived from the fetal (74.3% and 27.4%) and newborn (76.4% and 21.8%) fibroblasts of the Banna miniature inbred pig (P>0.05). However, both fetal and newborn fibroblast groups showed significantly higher rates than the adult fibroblast group (61.9% and 13.0%; P<0.05). The pregnancy rates of the recipients in the fetal and newborn fibroblast groups (60% and 80%, respectively) were higher than those in the adult fibroblast group. Eight, three, and one cloned piglet were obtained from reconstructed embryos of the fetal, newborn, and adult fibroblasts, respectively. Microsatellite analyses results indicated that the genotypes of all cloning piglets were identical to their donor cells and that the genetic homozygosity of the Banna miniature inbred pig was higher than those of the recipients. Therefore, the offspring was successfully cloned using the fetal, newborn, and adult fibroblasts of Banna miniature inbred pig as donor cells.     

塔克拉玛干沙漠南缘荒漠绿洲过渡带不同土地利用影响下土壤化学计量特征

荒漠绿洲过渡带在维护绿洲生态安全和绿洲稳定上具有重要作用。垦荒等土地利用的增强使得荒漠绿洲过渡带的健康稳定受到了巨大的挑战。以塔克拉玛干沙漠南缘典型荒漠绿洲过渡带为研究对象,系统分析了不同土地利用方式(桑田、半自然柽柳林、瓜地、棉花-玉米地)对土壤养分化学计量特征的影响。土壤取样沿农田到荒漠方向进行,分5层进行。研究发现,土壤各养分指标均受土地利用方式(4种)、土层(5层)和与农田边缘垂直距离(4梯度)的显著影响,且存在一定的交互作用。土地利用方式显著影响土壤各养分元素含量。随土层由浅到深,有机碳(C)、有效氮(N)和有效磷(P)基本呈下降趋势,全N具有波动变化,而全P变化不显著。随与农田边缘垂直距离的增加,各养分含量基本呈递减趋势。对同一土层(共选择三层)不同土地利用方式下土壤养分具体分析表明,棉花-玉米地这一利用方式在农田内部具有最高的土壤有机C和全N含量,其次为桑田。随着与农田边缘垂直距离的增加,土壤C、N含量优势减弱。除农田内部样地(0 m)外,三层土壤全P含量基本呈桑田柽柳林棉花-玉米地趋势。表层有效N含量在农田内部样地(0 m)瓜地最高,其他距离处(大于等于20 m)棉花-玉米地高,下层土壤有效氮含量在农田内部各土地利用方式间无差异。在各距离样点处不同土地利用类型间土壤有效P含量的变化无明显规律,在农田内部以瓜地有效P含量最高。棉花-玉米地土壤全量N/P在农田内部和与农田边缘垂直距离20 m处含量最高。三土层土壤有效N/P在农田内部以柽柳林最高,随着与农田边缘垂直距离增加,土壤有效N/P显著改变。综合来看,土地利用对荒漠绿洲过渡带土壤营养含量的增加具有正向作用,由土壤养分变化带来的生态效应值得关注。     

Cooling Induced Surface Reconstruction during Synthesis of High‐Ni Layered Oxides

Transition metal layered oxides have been the dominant cathodes in lithium‐ion batteries, and among them, high‐Ni ones (LiNi_xMn_yCo_zO₂; x ≥ 0.7) with greatly boosted capacity and reduced cost are of particular interest for large‐scale applications. The high Ni loading, on the other hand, raises the critical issues of surface instability and poor rate performance. The rational design of synthesis leading to layered LiNi_0.7Mn_0.15Co_0.15O₂ with greatly enhanced rate capability is demonstrated, by implementing a quenching process alternative to the general slow cooling. In situ synchrotron X‐ray diffraction, coupled with surface analysis, is applied to studies of the synthesis process, revealing cooling‐induced surface reconstruction involving Li₂CO₃ accumulation, formation of a Li‐deficient layer and Ni reduction at the particle surface. The reconstruction process occurs predominantly at high temperatures (above 350 °C) and is highly cooling‐rate dependent, implying that surface reconstruction can be suppressed through synthetic control, i.e., quenching to improve the surface stability and rate performance of the synthesized materials. These findings may provide guidance to rational synthesis of high‐Ni cathode materials.