Increased abundance of native and non-native spiders with habitat fragmentation

Habitat fragmentation and invasive species often contribute to the decline of native taxa. Since the penetration of non‐native species into natural habitat may be facilitated by habitat fragmentation, it is important to examine how these two factors interact. Previous research documented that, in contrast to most other arthropod taxa, spiders increased in density and morphospecies richness with decreasing fragment area and increasing fragment age (time since insularization) in urban habitat fragments in San Diego County, California, USA. We tested whether a specific mechanism, an increase in non‐native species with fragmentation, is responsible for this pattern. We found that both native and non‐native taxa contributed to the pattern. Abundance of native spiders per pitfall trap sample increased significantly with decreasing fragment size (i.e. a negative density–area relationship) and abundance of non‐natives increased significantly with increasing fragment age. The proportion of non‐native individuals also increased significantly with age. One non‐native species, Oecobius navus, comprised the majority of non‐native individuals (82.2%) and a significant proportion of total individuals (25.1%). Richness of spider families per sample (family density) increased with fragment age due to an increase in the occurrence of non‐natives in older fragments, however, native family richness did not vary with age or area. Due to increasing dominance by non‐native and some native families, family evenness declined with decreasing fragment size and increasing fragment age. Native and non‐native abundance covaried positively arguing against strong negative interactions between the two groups. O. navus had a strong positive association with another common non‐native arthropod, the Argentine ant (Linepitheme humile), suggesting a possible direct interaction. In contrast, abundance of native spiders was negatively correlated with Argentine ant abundance. We hypothesize that fragmentation in this semiarid habitat increases productivity in smaller and older fragments enhancing the density of both native and non‐native taxa.     

Genic homozygosity in an ancient reptile (Alligator mississippiensis)

Proteins assayed electrophoretically showed variation at only three of 49 presumed genetic loci in alligators from southwestern Louisiana. Average heterozygosity per individual was 0.021±0.012; proportion of polymorphic loci was 0.06. Data on the history, structure, and ecology of this alligator population are consistent with natural selection as the primary factor accounting for this low genetic variability. However, neither a historic population bottleneck nor some genetic mechanism limiting variability can be dismissed as a possible factor.The study was supported by NSF Grant BMS 73-0125 to H.C.D.     

Rotational mobility of the photoreaction center in chromatophore membranes of Rhodospirillum rubrum

We investigated the rotational mobility of the photoreaction center in chromatophores of Rhodospirillum rubrum by studying the photoinduced linear dichroism of absorption changes at 865 nm. The study was carried out in suspensions of chromatophores treated with ferricyanide in order to bleach their antenna bacteriochlorophyll and thus minimize depolarization by energy transfer. Very little depolarization of the photoinduced absorbance change at 865 nm was observed at room temperature for chromatophores immersed in a highly viscous medium over the time range 0–10 ms following an exciting light flash. In the light of independent evidence for transmembrane arrangement of the photoreaction center, we conclude that the photoreaction center protein is immobilized in the chromatophore membrane for at least 10 ms.     

Use of reversed-phase high-performance liquid chromatography for simultaneous determination of glutamine synthetase and glutamic acid decarboxylase in crude extracts

Glutamine and γ-aminobutyric acid (GABA), formed from glutamic acid in crude tissue extracts by glutamine synthetase and glutamic acid decarboxylase respectively, were separated by derivatization with dansyl chloride followed by reversed-phase high-performance liquid chromatography on an Altex Ultrasphere ODS-5 column. The mobile phase was a gradient of 100 mM potassium dihydrogen phosphate (pH 2.1) with 0–40% acetonitrile. The amounts of glutamine and GABA formed from glutamic acid were determined under different reaction conditions.     

Inferring consensus structure from nucleic acid sequences

This paper presents an unsupervised inference method for determiningthe higher-order structure from sequence data. The method isgeneral, but in this paper it is applied to nucleic acid sequencesin determining the secondary (2-D) and tertiary (3-D) structureof the macromolecule. The method evaluates position -positioninterdependence of the sequence using an information measureknown as expected mutual information. The expected mutual informationis calculated for each pair of positions and the chi-squaretest is used to screen statistically significant position pairs.In the calculation of expected mutual information, an unbiasedprobability estimator is used to overcome the problem associatedwith zero observation in conserved sites. A selection criterionbased on known structural constraints of the strongest interdependentposition pairs is applied yielding position pairs most indicativeof secondary and tertiary interactions. The method has beentested using tRNA and 5S rRNA sequences with very good results. Received on July 20, 1990; accepted on January 15, 1991