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排序方式: 共有160条查询结果,搜索用时 15 毫秒
1.
Abstract A partially purified Escherichia coli heat-stable (ST) enterotoxin had been shown to increase the 45 Ca2+ uptake by rat intestinal brush-border membrane vesicles (BBMV). The effect of ST enterotoxin on calcium uptake by BBMV was significant compared with the control and was also dose-dependent. The stimulation of calcium uptake by ST enterotoxin was inhibited by chemical agents which block the calcium entry into the cell. These data indicate that the ST acts as calcium ionophore in this particular system. 相似文献
2.
Asoke K. Talukder Shashidhar Ravishankar Krittika Sasmal Santhosh Gandham Jyothsna Prabhukumar Prahalad H. Achutharao Debmalya Barh Francesco Blasi 《PloS one》2015,10(4)
In translational cancer medicine, implicated pathways and the relevant master genes are of focus. Exome''s specificity, processing-time, and cost advantage makes it a compelling tool for this purpose. However, analysis of exome lacks reliable combinatory analysis tools and techniques. In this paper we present XomAnnotate – a meta- and functional-analysis software for exome. We compared UnifiedGenotyper, Freebayes, Delly, and Lumpy algorithms that were designed for whole-genome and combined their strengths in XomAnnotate for exome data through meta-analysis to identify comprehensive mutation profile (SNPs/SNVs, short inserts/deletes, and SVs) of patients. The mutation profile is annotated followed by functional analysis through pathway enrichment and network analysis to identify most critical genes and pathways implicated in the disease genesis. The efficacy of the software is verified through MDS and clustering and tested with available 11 familial non-BRCA1/BRCA2 breast cancer exome data. The results showed that the most significantly affected pathways across all samples are cell communication and antigen processing and presentation. ESCO1, HYAL1, RAF1 and PRKCA emerged as the key genes. Network analysis further showed the purine and propanotate metabolism pathways along with RAF1 and PRKCA genes to be master regulators in these patients. Therefore, XomAnnotate is able to use exome data to identify entire mutation landscape, pathways, and the master genes accurately with wide concordance from earlier microarray and whole-genome studies -- making it a suitable biomedical software for using exome in next-generation translational medicine.
Availability
http://www.iomics.in/research/XomAnnotate 相似文献3.
Probes are the interface between microsystems and bio-cells.The ideal interface is one-to-one interface.Though variousresearch groups have been able to establish some sort of interfaces after many years of research,they are very crude.Neurons aremillions in numbers,whereas the prostheses successfully built so far have only a few hundred probes at best.Creating an ef-fective interface is still far away.Though we have micro-and nano-technologies,we couldn’t build a prosthesis with an effectiveresolution.Main reasons behind it are the type of probe being used and the poor design of the probe.To address this problem,wedeveloped a methodology to design a probe and an array of probes with better resolution and less resistive donut probe.Thismethodology helps us to design a probe optimizing all the parameters.We presented our methodology through a design that iscapable of 70 μm penetration inside the tissue.The tissue heating by our designed probe is only 0.411 °C.We also characterizedthe donut probe,which could be used by any research group to design a donut probe of their specific need. 相似文献
4.
Jin Chuan Wu Hou Ran Low Yujun Leng Yvonne Chow Ruijiang Li MMR Talukder Won Jae Choi 《Biotechnology and Bioprocess Engineering》2006,11(3):211-214
ImmobilizedCandida antarctica lipase was used to catalyze the separation of ketoprofen into its components by means of esterification followed by the enzymatic
hydrolysis of the ester product. In this study, ketoprofen underwent esterification to ethanol in the presence of isooctane.
When the reaction was complete, 58.3% of the ketoprofen had been transformed into an ester. The ketoprofen remaining in solution
after the reation was complete consisted primarily of itsS-enantiomer (83.0%), while the 59.4% of the ketoprofen component of the ester consisted of itsR-enantiomer. We then subjected the ester product to enzymatic hydrolysis in the presence of the same enzyme and produced a
ketoprofen product rich in theR-enantiomer; 77% of this product consisted of theR-enantiomer when 50% of the ester had been hydrolyzed, and 90% of it consisted of theR-enantiomer when 30% of the ester had been hydrolyzed. By contrast, theR-enantiomer levels only reached approximately 42 and 65%, respectively, when 50 and 30% of the racemic ester was hydrolyzed
under the same conditions. 相似文献
5.
Sumon Kumar Das Shahnawaz Ahmed Farzana Ferdous Fahmida Dil Farzana Mohammod Jobayer Chisti Daniel T. Leung Mohammad Abdul Malek Kaisar Ali Talukder Pradip Kumar Bardhan Mohammed Abdus Salam Abu Syed Golam Faruque Rubhana Raqib 《PloS one》2013,8(4)
Background
Shigellosis continues to be a public health challenge for developing countries, including Bangladesh. The aim of the study is to demonstrate recent changes in Shigella sero-groups and their geographical diversity.Methods
Data were extracted from data archive of four diarrheal disease surveillance systems. A 2% sub sample from urban Dhaka Hospital (2008–2011; n = 10,650), and 10% from urban Mirpur Treatment Centre (2009–2011; n = 3,585), were enrolled systematically; whereas, all patients coming from the Health and Demographic Surveillance System area in rural Matlab (2008–2011; n = 6,399) and rural Mirzapur (2010–2011; n = 2,812) were included irrespective of age, sex, and disease severity. A fresh stool specimen was collected for identification of Shigella spp. Of them, 315 (3%) were positive for Shigella in Dhaka, 490 (8%) from Matlab, 109 (3%) from Mirpur and 369 (13%) from Mirzapur and considered as analyzable sample size.Results
Among all Shigella isolates regardless of age, significant decreases in percentage of S. flexneri over time was observed in Mirpur (55→29%; p value of χ2-for trend = 0.019) and Mirzapur (59→47%; p = 0.025). A non-significant decrease was also seen in Dhaka (58→48%), while in Matlab there was a non-significant increase (73→81%). Similar patterns were observed among under-5 children at all sites. Emergence of S. sonnei was found in Dhaka (8→25%; p<0.001) and Mirpur (10→33%; p = 0.015), whereas it decreased in Mirzapur (32→23%; p = 0.056). The emergence of S. boydii was seen in all ages in Mirzapur [(3→28%; p<0.001); (3→27%; p<0.001)]. On the other hand, we saw non-significant percent reductions in S. boydii in Dhaka [overall (25→16%); under-5 (16→9%)]. Decreasing rates of Shigella dysenteriae were observed in Matlab, Mirpur and Mirzapur; whereas, in Dhaka it remained unchanged.Conclusion and Significance
Emergence of S. sonnei and S. boydii as important infectious diarrhea etiologies and variations in geographical diversity underscore the need for monitoring, with possible implications for vaccine development. 相似文献6.
Laurence Rohmer Michael A Jacobs Mitchell J Brittnacher Christine Fong Hillary S Hayden Didier Hocquet Eli J Weiss Matthew Radey Yves Germani Kaisar Ali Talukder Anthony J Hager John M Kemner Elizabeth H Sims-Day Susana Matamouros Kyle R Hager Samuel I Miller 《BMC genomics》2014,15(1)
Background
Shigella dysenteriae type 1 (Sd1) causes recurrent epidemics of dysentery associated with high mortality in many regions of the world. Sd1 infects humans at very low infectious doses (10 CFU), and treatment is complicated by the rapid emergence of antibiotic resistant Sd1 strains. Sd1 is only detected in the context of human infections, and the circumstances under which epidemics emerge and regress remain unknown.Results
Phylogenomic analyses of 56 isolates collected worldwide over the past 60 years indicate that the Sd1 clone responsible for the recent pandemics emerged at the turn of the 20th century, and that the two world wars likely played a pivotal role for its dissemination. Several lineages remain ubiquitous and their phylogeny indicates several recent intercontinental transfers. Our comparative genomics analysis reveals that isolates responsible for separate outbreaks, though closely related to one another, have independently accumulated antibiotic resistance genes, suggesting that there is little or no selection to retain these genes in-between outbreaks. The genomes appear to be subjected to genetic drift that affects a number of functions currently used by diagnostic tools to identify Sd1, which could lead to the potential failure of such tools.Conclusions
Taken together, the Sd1 population structure and pattern of evolution suggest a recent emergence and a possible human carrier state that could play an important role in the epidemic pattern of infections of this human-specific pathogen. This analysis highlights the important role of whole-genome sequencing in studying pathogens for which epidemiological or laboratory investigations are particularly challenging.Electronic supplementary material
The online version of this article (doi: 10.1186/1471-2164-15-355) contains supplementary material, which is available to authorized users. 相似文献7.
Suman Kanungo Bandana Sen Thandavarayan Ramamurthy Dipika Sur Byomkesh Manna Gururaja P. Pazhani Goutam Chowdhury Puja Jhunjhunwala Ranjan K. Nandy Hemanta Koley Mihir Kumar Bhattacharya Sanjay Gupta Gaurav Goel Bindu Dey Thungapathra M G. Balakrish Nair Amit Ghosh Dilip Mahalanabis 《PloS one》2014,9(7)
Background
A live oral cholera vaccine VA 1.4 developed from a non-toxigenic Vibrio cholerae O1 El Tor strain using ctxB gene insertion was further developed into a clinical product following cGMP and was evaluated in a double-blind randomized placebo controlled parallel group two arm trial with allocation ratio of 1∶1 for safety and immunogenicity in men and women aged 18–60 years from Kolkata, India.Method
A lyophilized dose of 1.9×109 CFU (n = 44) or a placebo (n = 43) reconstituted with a diluent was administered within 5 minutes of drinking 100 ml of a buffer solution made of sodium bicarbonate and ascorbic acid and a second dose on day 14.Result
The vaccine did not elicit any diarrhea related adverse events. Other adverse events were rare, mild and similar in two groups. One subject in the vaccine group excreted the vaccine strain on the second day after first dose. The proportion of participants who seroconverted (i.e. had 4-folds or higher rise in reciprocal titre) in the vaccine group were 65.9% (95% CI: 50.1%–79.5%) at both 7 days (i.e. after 1st dose) and 21 days (i.e. after 2nd dose). None of the placebo recipients seroconverted. Anti-cholera toxin antibody was detected in very few recipients of the vaccine.Conclusion
This study demonstrates that VA 1.4 at a single dose of 1.9×109 is safe and immunogenic in adults from a cholera endemic region. No additional benefit after two doses was seen.Trial Registration
Clinical Trials Registry-India, National Institute of Medical Statistics (Indian Council of Medical Research) CTRI/2012/04/002582 相似文献8.
Lanthanum belongs to the group of elements known as “lanthanons,” which also includes cerium, europium, promethium, and thulium. It is the most electropositive element of the rare earth group, is uniformly trivalent, and is similar in its chemical properties to the alkaline earth elements. The effects of this element and its compounds on cellular systems are of considerable interest because of their increasing use in industry and as a substitute or antagonist for calcium in a variety of cellular reactions. Lanthanum is also being employed extensively in studying anatomical barriers, membrane structure, and subcellular transport systems, particularly the calcium pathway. 相似文献
9.
Early 3rd instarDiacrisia obliqua Walk. larvae were treated with concentrations ofBacillus thuringiensis var.kurstaki (Dipel®) and the growth of treated larvae was assessed. All the doses reduced significantly the weight and survival of the insects (p<0.001). 相似文献
10.
Mohammad Ali Amanda K. Debes Francisco J. Luquero Deok Ryun Kim Je Yeon Park Laura Digilio Byomkesh Manna Suman Kanungo Shanta Dutta Dipika Sur Sujit K. Bhattacharya David A. Sack 《PLoS medicine》2016,13(9)
IntroductionVaccinating a buffer of individuals around a case (ring vaccination) has the potential to target those who are at highest risk of infection, reducing the number of doses needed to control a disease. We explored the potential vaccine effectiveness (VE) of oral cholera vaccines (OCVs) for such a strategy.ConclusionsThese findings suggest that high-level protection can be achieved if individuals living close to cholera cases are living in a high coverage ring. Since this was an observational study including participants who had received two doses of vaccine (or placebo) in the clinical trial, further studies are needed to determine whether a ring vaccination strategy, in which vaccine is given quickly to those living close to a case, is feasible and effective.