Long-term exclosure of sheep-grazing from an ancient wood: Vegetation change after a sixty-year experiment

Question: An ancient woodland site with a long history of coppicing and heavy grazing was protected from domesticated stock in 1955. Results of a vegetation-monitoring experiment were subsequently published in 1983. This study followed up the original research to investigate whether observed trends were as predicted. These included a shift in tree species composition in favour of shade-tolerant species, beech (Fagus sylvatica) and rowan (Sorbus aucuparia), at the expense of light-demanding birch (Betula spp.) and oak (Quercus petraea agg.), and progress towards a typical woodland ground flora. Location: Peak District National Park, United Kingdom. Methods: The mixed oak–birch woodland was re-surveyed in 2011. Two enclosures (1955 and 1980s) and an unenclosed control area were investigated. Overstorey structure and composition was assessed by measuring canopy openness and the girths of all trees and saplings. Herb layer species composition was also recorded in 28 vegetation plots. Results: We demonstrated a progressive decline in the number of mature oaks and birch in the old enclosure although they still regenerated successfully. Only a few individuals of beech and rowan appeared. Herb layer species composition differed between the subareas but since the 1980s, the temporal change in the old enclosure was negligible. The new enclosure followed a similar pattern in both canopy and herb layer as observed in the early years in the old enclosure. However, the control subarea had no regeneration of woody species and limited ground flora. Conclusions: After nearly 60 years, the replacement of light-demanding dominants by shade-tolerant trees was still limited, probably by low pH and stable light conditions. The findings are pertinent to the impacts of large herbivore grazing (domestic stock or wild) on woodland dynamics.     

Host selection by the Louse Fly Crataerina pallida, an avian nest ectoparasite of the Common Swift Apus apus

Preferences by parasites for particular hosts may have important implications for the functioning of host–parasite systems, however, this parasitic life-history trait remains little studied. No detrimental effect of Louse Fly Crataerina pallida parasitism has been found on Common Swift Apus apus nestling hosts. Host selection choices may be mediating the effect this parasite has and account for this apparent avirulence. Two aspects of parasite host selection were studied at a breeding colony of Common Swifts during 2008; (1) intra-brood differences in C. pallida parasitism were studied to determine the influence of nestling rank, (2) differences in male and female C. pallida parasitism were investigated, as they may result in varying costs of parasitism to hosts. C. pallida populations were found to preferentially parasitize higher rather than lower ranking nestlings within broods of both two and three chicks. Greater proportions of females were seen upon nestlings than at the nest, and upon higher ranking than lower ranking nestlings within broods. These results indicate that host selection occurs and this may thus account for the lack of parasitic virulence reported within this host–parasite system.     

Characteristics of Crataerina pallida (Diptera: Hippoboscidae) populations; a nest ectoparasite of the common swift, Apus apus (Aves: Apodidae)

An essential pre-requisite to understanding the nature of a host-parasite relationship is a good knowledge of the parasite’s ecology, including its life history. Despite removing a significant amount of blood from their common swift (Apus apus) hosts, no detrimental effect of parasitism by the louse fly (Crataerina pallida) has been found. This may be because little is known of the characteristics of the populations of this parasite. We studied the structure of louse fly populations that may influence its pathogenicity. High levels of prevalence were seen, with 100% of nests being parasitized during 2007 and 2008. Louse fly pupae were found to be aggregated, with a frequency distribution best described by the negative binomial model in 2006-2008. The mean parasitic load per nest was 3.72 ± 2.65 in 2007 and 4.21 ± 3.09 in 2008, much higher than that found in comparative studies. Louse fly numbers declined throughout the swift breeding season. Parasite populations were heavily female biased, except for at the initial and final stages of the nestling period.     

Assessing the diversity of New Zealand freshwater harpacticoid copepods (Crustacea: Copepoda) using mitochondrial DNA (COI) barcodes

Taxonomic and ecological studies of freshwater harpacticoid copepods are limited globally by the ability to easily and accurately identify specimens. Here, we test the use of the mitochondrial cytochrome c oxidase subunit I (COI) gene locus as a tool for assessing the diversity of freshwater Harpacticoida. We obtained sequences from New Zealand harpacticoid copepods, representing two families, five genera and nine species, including the non-indigenous Elaphoidella sewelli. All species were delineated by the COI gene. However, high intraspecific diversity was evident among populations of Elaphoidella bidens (>12%), and between North and South Island populations of Bryocamptus pygmaeus (>18%), potentially indicating the presence of morphologically cryptic taxa. We suggest that mitochondrial DNA (COI) sequences can provide a useful tool for the routine identification of freshwater harpacticoid copepods. Applications of these data will include assessing species diversity and biogeography as well as assisting with the detection of non-indigenous species.     

Conformational analysis of macrocyclic frankincense (<Emphasis Type="Italic">Boswellia</Emphasis>) diterpenoids

Frankincense oleoresin has been used in traditional medicine for more than 5000 years. The phytochemistry of frankincense (Boswellia spp.) resins includes triterpenoids (including boswellic acids and their derivatives), diterpenoids (cembrenoids and cneorubenoids), and essential oils. The macrocyclic cembrene diterpenoids may play a part in the biological activities of frankincense resin, but neither the biological targets nor the modes of interaction with the targets are currently known. How these macrocycles interact with biological macromolecules likely depends on what conformation(s) are energetically available to them. In this work, a conformational analysis of 15 Boswellia cembrene diterpenoids and 1 verticillane diterpenoid was carried out at the B3LYP/6-31G* and M06-2X/6-31G* levels of theory, including the SM8 aqueous solvation model. The lowest-energy conformations of boscartin B and incensole oxide were the same as the previously reported X-ray crystal structures, while the lowest-energy conformations of boscartins A and C were very similar to the crystal structures. Boscartins D-H and isoincensole oxide showed only one low-energy conformation for each compound and are predicted to be conformationally locked. Incensole, isoincensolol, and serratol are predicted to be conformationally mobile with several low-energy forms. The conformational mobility of Boswellia cembrenoid diterpenoids depends largely on the degree of epoxidation, either oxirane or tetrahydrofuran rings.     

Evidence of multiple introductions and genetic admixture of the Asian brush-clawed shore crab <Emphasis Type="Italic">Hemigrapsus takanoi</Emphasis> (Decapoda: Brachyura: Varunidae) along the Northern European coast

The Asian brush-clawed shore crab Hemigrapsus takanoi is a non-indigenous species along the Northern European coast. Although the history of range expansion of European H. takanoi has been well-documented, little is known about the genetic compositions of either the introduced European populations or the native Asian ones. We therefore collected H. takanoi broadly from their native Asian sites and introduced European ranges, and genotyped them by sequencing the mitochondrial 16S RNA gene and by analyzing nuclear microsatellite loci. Our results revealed that the H. takanoi Bay of Seine (France) populations consisted of a genetic admixture between populations in Japan and those in the Yellow Sea region. These French populations should be carefully monitored in the future, since the genetic admixture of multiple source populations may accelerate range expansion in non-indigenous organisms. Our results also suggested that shipping lines from East Asia were more probable vectors than historical juvenile oyster transportations from Japan for the foundation of present European H. takanoi populations. Interestingly, gene flow between populations in Japan and those in the Yellow Sea region (i.e., domestic invasion) was not observed despite the higher potential for artificial translocations via shipping lines in the native Asian range compared with those from Asia to Europe. The lack of domestic invasions implied that intra-specific priority effects of the resident H. takanoi populations played an important role in preventing the successful colonization of artificially-transferred individuals.     

Sampling estuarine fish using multi-mesh gill nets: Effects of panel length and soak and setting times

Experiments on the effects of soak (1, 3 and 6 h) and setting times (18:00, 22:00 and 3:00 h), and panel length (20, 50, 120 m) on catches of fish in multi-mesh (38, 54 and 89 mm) gill nets were done in a south-east Australian estuary to develop an optimal, representative and standardized sampling methodology for future fishery-independent surveys of estuarine icthyofauna. Univariate analysis revealed that while the longest soak times and panels often caught significantly more numbers and species of fish, there were no differences between short and intermediate soak times. Further, where differences between soak time and panel length treatments were detected, fish were often being caught in the same relative proportions. Standardized catch-per-unit-of-effort (CPUE) (numbers of fish caught 20 m^− 1 of net h^− 1) decreased significantly with increasing soak time, but there were no differences in CPUE between different panel lengths for the total numbers of fish and key species caught. Multivariate analyses failed to detect any differences in fish assemblages between soak times and panel lengths for 38 and 89 mm mesh. However, inconsistent and species-specific differences in the abundances of common species accounted for differences in assemblage structure for the 54 mm mesh. Similarly, while the size ranges of most species of economic importance were comparable between different panel lengths and soak times, there were inconsistent differences in the proportions of fish captured across size classes for some species. Setting time had no effect on the mean numbers of fish or species caught, structure of assemblages or size-ranges of most species investigated. Based on these results, the use of 20-m panels soaked for 1 h at any time during the night was considered optimal for future surveys. The benefits of this uniform sampling methodology are discussed in terms of increased replication, reduced costs and the potential for lower fish mortality.