The annual marine feeding aggregation of Atlantic sturgeon Acipenser oxyrinchus in the inner Bay of Fundy: population characteristics and movement

Atlantic sturgeon Acipenser oxyrinchus aggregate to feed from May to October in Minas Basin (45° N; 64° W), a large, cul‐de‐sac embayment of the inner Bay of Fundy. The aggregation consists mainly of migrants from the Saint John, NB and Kennebec Rivers, ME (99%). During 2004–2015, 4393 A. oxyrinchus were taken as by‐catch by commercial fish trawlers or at intertidal fishing weirs, and 1453 were marked and/or sampled and released. Fork length (L_F) ranged from 458 to 2670 mm, but 72·5% were <1500 mm. Mass (M) ranged from 0·5 to 58·0 kg. The mass‐length relationship for fish ≤50 kg was log₁₀M = 3·32log₁₀L_F ? 5·71. Observed growth of unsexed A. oxyrinchus recaptured after 1–8 years indicated fish of 90–179 cm L_F grew c. 2–4 cm a year. Ages obtained from pectoral spines were from 4 to 54 years. The Von Bertalanffy growth model predicted K = 0·01 and L_∞ = 5209 mm L_F. Estimated annual mortality was 9·5–10·9%. Aggregation sizes in 2008 and 2013 were 8804 and 9244 individuals, respectively. Fish exhibited high fidelity for yearly return to Minas Basin and population estimates indicated the total at‐sea number utilizing the Basin increased from c. 10 700 in 2010 to c. 37 500 in 2015. Abundance in the Basin was greatest along the north shore in spring and along the south shore in summer, suggesting clockwise movement following the residual current structure. Marked individuals were recaptured in other bays of the inner Bay of Fundy, north to Gaspé, Quebec, and south to New Jersey, U.S.A., with 26 recoveries from the Saint John River, NB, spawning run. Fish marked at other Canadian and U.S. sites were also recovered in Minas Basin. Since all A. oxyrinchus migrate into and out of the Basin annually they will be at risk of mortality if planned tidal power turbines are installed in Minas Passage.     

De novo design,synthesis and evaluation of a non-steroidal diphenylnaphthyl propylene ligand for the estrogen receptor

There is still a strong need for additional diversity and new chemical scaffolds to allow for the exploration of improved tissue selectivity and finding better selective estrogen receptor modulators (SERMs). Using a de novo design technology a diphenylnaphthyl propylene scaffold, exemplified by (E)-9b, with ER antagonist activity has been generated. It was prepared by alkylating 1-[4-methoxyphenyl)-2-(4-(2-chloroethoxy)phenyl]-1-propanone under metal halogen exchange conditions with 1-iodo-6-methoxy-naphthalene. Following dehydration and cleavage of the methoxy groups, (E)-9b was formed by displacement of the chloro group with pyrrolidine. (E)-9b binding to ER generated calculated K(i) values of 3.7 nM for hER(alpha) and 72 nM for hER(beta). The antagonism of (E)-9b was demonstrated in cell transfection assays using the ERE from the vitA2 promotor and the natural ER-responsive pS2 promotor. With increasing concentrations of (E)-9b, the E(2)-dependent response was efficiently inhibited demonstrating that (E)-9b could function as an anti-estrogen in these assays. Interestingly, ER(alpha) activity was inhibited even below basal levels suggesting that ligand-independent activity of ER(alpha) was also inhibited. Computational docking studies suggest that the placement of the hydroxyl group on the naphthalene group may not be optimal and we are currently exploring additional analogues.     

Lack of epifaunal response to the application of salt for managing the noxious green alga <Emphasis Type="Italic">Caulerpa taxifolia</Emphasis> in a coastal lake

Since the discovery of the green alga Caulerpa taxifolia in Lake Macquarie (New South Wales, Australia) in 2001, the New South Wales Department of Primary Industries (Fisheries) has attempted various control methods, including covering the alga with granulated sea salt to induce osmotic shock and cell lysis. In Lake Macquarie, C. taxifolia often occurs in patches within beds of the native seagrass Zostera capricorni. Although the effects of the salt treatment on blades of Z. capricorni and infauna have been shown to be minimal, there have been no tests of any effects on other native biota, including seagrass epifauna. In this study, we tested the general hypothesis that the abundance and diversity of epifauna would be reduced by salting. We used a ‘Beyond BACI’ experimental design whereby epifaunal invertebrates were sampled 3 months, 6 weeks and 6 days before and then again after salting. Epifaunal abundances at the putatively impacted (salted) location were compared to those at 4 control locations (where no salt was applied). Abundances of most organisms varied significantly among times and locations with no evidence of the consistent effect of salting on diversity or abundance of epifauna. The study represents an example of the use of large-scale managerial action as a scientific experiment. Electronic supplementary material Supplementary material is available for this article at <> and accessible for authorised users     

Spatiotemporal regulation of PKC via interactions with AKAP7 isoforms

The regulation of kinases by scaffolding proteins greatly contributes to the fidelity of signal transduction. In the present study, we explored an interaction between the ubiquitous enzyme PKC (protein kinase C) and the scaffolding protein AKAP7 (A-kinase-anchoring protein 7). Using protein biochemistry and surface plasmon resonance approaches, we demonstrate that both AKAP7γ and AKAP7α are capable of high-affinity interactions with multiple isoenzymes of PKC. Furthermore, this interaction is achieved via multi-site binding on both proteins. FRET (fluorescence resonance energy transfer) analysis using a PKC activity reporter suggests that anchoring of the kinase within AKAP7 complexes enhances the phosphorylation of substrate proteins. Finally, we determined using FRAP (fluorescence recovery after photobleaching) and virtual modelling that AKAP7 restricts the mobility of PKC within cells by tethering it to subcellular compartments. Collectively, the results of the present study suggests that AKAP7 could play an integral role in dictating PKC localization and function in tissues where the two proteins are co-expressed.     

Diversity and partial characterization of putative virulence determinants in Pasteuria penetrans, the hyperparasitic bacterium of root-knot nematodes (Meloidogyne spp.)

Antigens recognized by monoclonal antibodies (Mabs) raised to the surface of the obligate nematode hyperparasite Pasteuria penetrans were characterized. Using the attachment of spores of the bacterium to host nematodes to determine the biological variability present on the spore surface greatly underestimated the amount of surface heterogeneity present compared with estimates from immunological techniques. This heterogeneity differed not only between different individual spores from the same population but also between different spore populations. None of the Mabs completely inhibited any spore population from attaching to the nematode cuticle, suggesting that the mechanism of attachment may be more complex than previously supposed. Chemical degradation of one particular epitope recognized by monoclonal antibody PP1/117, and designated ep117, occurred after treatment with NaOH, periodate or Proteinase K, suggesting that an O-linked glycoprotein may be involved. Fibronectin, which had been found to bind to Pasteuria spores through hydrophobic interactions, also prohibited the Mab from recognizing ep117. However, SDS-PAGE of spore extracts followed by immunoblotting showed that none of the Mabs could detect this epitope and so ep117 may be conformational in nature. Thus, the conformation of any particular epitope recognized by a Mab may be important in determining to which nematode a particular spore will attach. The distribution of a particular epitope within a population of spores will in turn therefore determine its virulence on a particular nematode.     

Effects of increases in salinity on phytoplankton in the Broadwater of the Myall Lakes, NSW, Australia

The Broadwater of the Myall Lakes system is highly susceptible to cyanobacterial bloom formation after heavy rain events. During prolonged low flow periods, saline intrusion from the lower Myall River increases salinity levels and effectively controls some bloom forming algal taxa. To assess the effect of low-to-moderate increases in salinity (up to 4 ppt) on phytoplankton chlorophyll a, cell abundance, diversity and assemblage structure, salinity enhancement experiments were conducted on Broadwater samples collected in June 2005 (salinity 1.5 ppt), October 2005 (4 ppt) and January 2006 (12 ppt). Natural phytoplankton assemblages were incubated in the laboratory for 10 days, under different treatments of salinity (no addition, +2 ppt, + 4 ppt) and nutrient conditions (no addition, excess N+P). The greatest impact of salinity enhancement in N+P enriched samples was observed in June (1.5–5.5 ppt); chlorophyll a was significantly reduced in samples with the highest salinity treatment, and the taxon most negatively affected by an elevation in salinity to 5.5 ppt was Anabaena circinalis. Taxonomic richness and diversity (Shannon–Wiener index) were unexpectedly significantly higher at 5.5 ppt than at 1.5 ppt. This result, in part, explains the observed significant differences in phytoplankton assemblage structure over this salinity range. In October, the main effect of elevating salinity levels from 4 ppt to 8 ppt was a reduction in the abundance of chlorophytes, particularly Scenedesmus. Phytoplankton samples that were collected when the lake salinity level was 12 ppt were little affected by salinity increases of 2 ppt and 4 ppt, most likely because field samples were already relatively high in salt content. We suggest that further investigations focus on phytoplankton responses to salinity under a range of nutrient regimes that are common to coastal lakes.     

Difference characteristics of phosphorus in Chara and two submerged angiosperm species: implications for phosphorus nutrient cycling in an aquatic ecosystem

Phosphorus speciation in three submerged macrophytes species, Chara fibrosa Agardh ex Bruzelius, Najas marina Linnaeus and Vallisneria gigantea Graebner, and the implications for phosphorus nutrient cycling in an aquatic ecosystem were studied, using sequential phosphorus fractionations. The results showed that C.␣fibrosa had a far higher residual ash and calcium content compared with the two angiosperm species, but lower total phosphorus content. Two different fractionation methods for phosphorus showed that the bioavailable water-soluble phosphorus (H₂O-P) and ammonium chloride extractable phosphorus (NH₄Cl-P) of the extractions used represented the major part of total plant phosphorus in the two angiosperm species, while organic phosphorus (NaOH-P) represented a relatively large fraction in C. fibrosa. In this species, about 12–15% of total plant phosphorus was calcium-bound phosphorus (HCl-P), occurring as co-precipitation with calcite encrustation, but this fraction was negligible in the two angiosperm species, i.e. less than 1%. The redox-insensitive forms of HCl-P are considered less bioavailable and not affected by anoxic conditions of bottom sediment, thus have potential as a phosphorus nutrient sink in aquatic ecosystems.     

Use of GIS and high resolution LiDAR in salt marsh restoration site suitability assessments in the upper Bay of Fundy, Canada

Salt marshes exhibit striking vegetation zonation corresponding to spatially variable elevation gradients which dictate their frequency of inundation by the tides. The salt marshes in the upper Bay of Fundy, a dynamic hypertidal system, are of considerable interest due to increasing recognition of salt marsh ecosystem values and the extent of prior conversion of salt marshes to agricultural lands, much of which are no longer in use. To determine the suitability of two potential restoration sites at Beausejour Marsh in New Brunswick, Canada, geomatics technologies and techniques were used to assess vegetation and elevation patterns in an adjacent reference salt marsh and the proposed restoration sites. Light detection and ranging digital elevation models (DEMs) were created for the reference marsh and the restoration sites in both the spring (leaf-off) and late summer (leaf-on, maximum biomass) periods. Aerial photographs and Quickbird multispectral imagery were used to visually interpret vegetation zones on the reference marsh and were field validated using vegetation characteristics from quadrats referenced with differential GPS. Elevation limits of the salt marsh vegetation zones were extracted from the DEM of the reference marsh and applied to the DEM of the restoration sites to determine the percentage area of each site that would be immediately suitable for new salt marsh growth. Of the two restoration sites assessed, one had experienced significant subsidence since dyking; only about 40 % of the site area was determined to be of sufficient elevation for immediate vegetation colonization. The second site, while more than 88 % suitable, would require the installation of a large dyke on the landward side of the restoration site to prevent flooding of adjacent lands. This study provides essential high resolution elevation and vegetation zonation data for use in restoration site assessments, and highlights the usefulness of applied geomatics in the salt marsh restoration planning process.     

Treatment of diabetic wounds with fetal murine mesenchymal stromal cells enhances wound closure

The dental follicle is a mesenchymal tissue that surrounds the developing tooth germ. During tooth root formation, periodontal components, viz., cementum, periodontal ligament (PDL), and alveolar bone, are created by dental follicle progenitors. Here, we report the presence of PDL progenitors in mouse dental follicle (MDF) cells. MDF cells were obtained from mouse incisor tooth germs and immortalized by the expression of a mutant human papilloma virus type 16 E6 gene lacking the PDZ-domain-binding motif. MDF cells expressing the mutant E6 gene (MDF ^E6-EGFP cells) had an extended life span, beyond 150 population doublings (PD). In contrast, normal MDF cells failed to proliferate beyond 10 PD. MDF ^E6-EGFP cells expressed tendon/ligament phenotype-related genes such as Scleraxis (Scx), growth and differentiation factor-5, EphA4, Six-1, and type I collagen. In addition, the expression of periostin was observed. To elucidate the differentiation capacity of MDF ^E6-EGFP cells in vivo, the cells were transplanted into severe combined immunodeficiency mice. At 4 weeks, MDF ^E6-EGFP cell transplants had the capacity to generate a PDL-like tissue that expressed periostin, Scx, and type XII collagen and the fibrillar assembly of type I collagen. Our findings suggest that MDF ^E6-EGFP cells can act as PDL progenitors, and that these cells may be a useful research tool for studying PDL formation and for developing regeneration therapies. This work was supported by a Grant-in Aid for the High-Tech Research Center Project from the Ministry of Education, Culture, Sports, Science, and Technology of Japan, the AGU High-Tech Research Center Project, the 2003-Multidisciplinary Research Project from MEXT, and grants from the Ministry of Education, Culture, Sports, Science, and Technology of Japan.     

Correcting for measurement error in individual ancestry estimates in structured association tests

We present theoretical explanations and show through simulation that the individual admixture proportion estimates obtained by using ancestry informative markers should be seen as an error-contaminated measurement of the underlying individual ancestry proportion. These estimates can be used in structured association tests as a control variable to limit type I error inflation or reduce loss of power due to population stratification observed in studies of admixed populations. However, the inclusion of such error-containing variables as covariates in regression models can bias parameter estimates and reduce ability to control for the confounding effect of admixture in genetic association tests. Measurement error correction methods offer a way to overcome this problem but require an a priori estimate of the measurement error variance. We show how an upper bound of this variance can be obtained, present four measurement error correction methods that are applicable to this problem, and conduct a simulation study to compare their utility in the case where the admixed population results from the intermating between two ancestral populations. Our results show that the quadratic measurement error correction (QMEC) method performs better than the other methods and maintains the type I error to its nominal level.