Stand age-related effects on soil respiration in a first rotation Sitka spruce chronosequence in central Ireland

The effect of stand age on soil respiration and its components was studied in a first rotation Sitka spruce chronosequence composed of 10‐, 15‐, 31‐, and 47‐year‐old stands established on wet mineral gley in central Ireland. For each stand age, three forest stands with similar characteristics of soil type and site preparation were used. There were no significant differences in total soil respiration among sites of the same age, except for the case of a 15‐year‐old stand that had lower soil respiration rates due to its higher productivity. Soil respiration initially decreased with stand age, but levelled out in the older stands. The youngest stands had significantly higher respiration rates than more mature sites. Annual soil respiration rates were modelled by means of temperature‐derived functions. The average Q ₁₀ value obtained treating all the stands together was 3.8. Annual soil respiration rates were 991, 686, 556, and 564 g C m^?2 for the 10‐, 15‐, 31‐, and 47‐year‐old stands, respectively. We used the trenching approach to separate soil respiration components. Heterotrophic respiration paralleled soil organic carbon dynamics over the chronosequence, decreasing with stand age to slightly increase in the oldest stand as a result of accumulated aboveground litter and root inputs. Root respiration showed a decreasing trend with stand age, which was explained by a decrease in fine root biomass over the chronosequence, but not by nitrogen concentration of fine roots. The decrease in the relative contribution of autotrophic respiration to total soil CO₂ efflux from 59.3% in the youngest stand to 49.7% in the oldest stand was explained by the higher activity of the root system in younger stands. Our results show that stand age should be considered if simple temperature‐based models to predict annual soil respiration in afforestation sites are to be used.     

Bioethanol production from sugarcane and emissions of greenhouse gases – known and unknowns

Bioethanol production from sugarcane is discussed as an alternative energy source to reduce dependencies of regional economies on fossil fuels. Even though bioethanol production from sugarcane is considered to be a beneficial and cost‐effective greenhouse gas (GHG) mitigation strategy, it is still a matter of controversy due to insufficient information on the total GHG balance of this system. Aside from the necessity to account for the impact of land use change (LUC), soil N₂O emissions during sugarcane production and emissions of GHG due to preharvest burning may significantly impact the GHG balance. Based on a thorough literature review, we show that direct N₂O emissions from sugarcane fields due to nitrogen (N) fertilization result in an emission factor of 3.87±1.16% which is much higher than suggested by IPCC (1%). N₂O emissions from N fertilization accounted for 40% of the total GHG emissions from ethanol–sugarcane production, with an additional 17% from trash burning. If LUC‐related GHG emissions are considered, the total GHG balance turns negative mainly due to vegetation carbon losses. Our study also shows that major gaps in knowledge still exist about GHG sources related to agricultural management during sugarcane production, e.g. effects of irrigation, vinasse and filter cake application. Therefore, more studies are needed to assess if bioethanol from sugarcane is a viable option to reduce energy‐related GHG emissions.     

Perspectives from early career researchers on the publication process in ecology – a response to Statzner & Resh (2010)

1. Two senior ecologists summarised their experience of the scientific publication process ( Statzner & Resh, Freshwater Biology, 2010 ; 55 , 2639) to generate discussion, particularly among early career researchers (ECRs). As a group of eight ECRs, we comment on the six trends they described. 2. We generally agree with most of the trends identified by Statzner & Resh (2010) , but also highlight a number of divergent perspectives and provide recommendations for change. Trends of particular concern are the use of inappropriate metrics to evaluate research quality (e.g. impact factor) and the salami slicing of papers to increase paper count. We advocate a transparent and comprehensive system for evaluating the research. 3. We stress the importance of impartiality and independence in the peer review process. We therefore suggest implementation of double‐blind review and quality control measures for reviewers and possibly editors. Besides such structural changes, editors should be confident to overrule biased reviewer recommendations, while reviewers should provide helpful reviews but be explicit if a submission does not meet quality standards. Authors should always conduct a thorough literature search and acknowledge historical scientific ideas and methods. Additionally, authors should report low‐quality copy editing and reviews to the editors. 4. Both early and late career researchers should jointly implement these recommendations to reverse the negative trends identified by Statzner & Resh (2010) . However, more senior scientists will always have to take the lead with respect to structural changes in the publication system given that they occupy the majority of decision‐making positions.     

Stress Responses in Avian Embryos

The day 13–14 chicken embryo is a useful model for studieson prenatal stress responses. Free dopamine, norepinephrineand epinephrine in its plasma, amniotic and allantoic fluidrespond to a variety of stresses. The allantoic fluid also containsconjugated catecholamines and conjugated steroids. However,a blood/allantois barrier excludes free thyroid hormones andfree steroids, and insulin. On the other hand, the allantoicfluid contains at least 40 amino acids (including six excitatoryamino acids) and related compounds. Most, possibly all, componentsof the allantoic fluid are regulated at specific blood/allantoisand amnion/allantois barriers, and they respond to ethanol stressand metabolite loading differentially. The avian allantois isa depot for important metabolites and messenger substances whichseems to be controlled by as yet unidentified hormones     

Variation of carbon isotope fractionation in hydrogenotrophic methanogenic microbial cultures and environmental samples at different energy status

Methane is a major product of anaerobic degradation of organic matter and an important greenhouse gas. Its stable carbon isotope composition can be used to reveal active methanogenic pathways, if associated isotope fractionation factors are known. To clarify the causes that lead to the wide variation of fractionation factors of methanogenesis from H₂ plus CO₂ (), pure cultures and various cocultures were grown under different thermodynamic conditions. In syntrophic and obligate syntrophic cocultures thriving on different carbohydrate substrates, fermentative bacteria were coupled to three different species of hydrogenotrophic methanogens of the families Methanobacteriaceae and Methanomicrobiaceae. We found that C‐isotope fractionation was correlated to the Gibbs free energy change (ΔG) of CH₄ formation from H₂ plus CO₂ and that the relation can be described by a semi‐Gauss curve. The derived relationship was used to quantify the average ΔG that is available to hydrogenotrophic methanogenic archaea in their habitat, thus avoiding the problems encountered with measurement of low H₂ concentrations on a microscale. Boreal peat, rice field soil, and rumen fluid, which represent major sources of atmospheric CH₄, exhibited increasingly smaller , indicating that thermodynamic conditions for hydrogenotrophic methanogens became increasingly more favourable. Vice versa, we hypothesize that environments with similar energetic conditions will also exhibit similar isotope fractionation. Our results, thus, provide a mechanistic constraint for modelling the ¹³C flux from microbial sources of atmospheric CH₄.     

Soil nitrous oxide and methane fluxes are low from a bioenergy crop (canola) grown in a semi-arid climate

Understanding nitrous oxide (N₂O) and methane (CH₄) fluxes from agricultural soils in semi‐arid climates is necessary to fully assess greenhouse gas emissions from bioenergy cropping systems, and to improve our knowledge of global terrestrial gaseous exchange. Canola is grown globally as a feedstock for biodiesel production, however, resulting soil greenhouse gas fluxes are rarely reported for semi‐arid climates. We measured soil N₂O and CH₄ fluxes from a rain‐fed canola crop in a semi‐arid region of south‐western Australia for 1 year on a subdaily basis. The site included N fertilized (75 kg N ha^?1 yr^?1) and nonfertilized plots. Daily N₂O fluxes were low (?1.5 to 4.7 g N₂O‐N ha^?1 day^?1) and culminated in an annual loss of 128 g N₂O‐N ha^?1 (standard error, 12 g N₂O‐N ha^?1) from N fertilized soil and 80 g N₂O‐N ha^?1 (standard error, 11 g N₂O‐N ha^?1) from nonfertilized soil. Daily CH₄ fluxes were also low (?10.3 to 11.9 g CH₄‐C ha^?1 day^?1), and did not differ with treatments, with an average annual net emission of 6.7 g CH₄–C ha^?1 (standard error, 20 g CH₄–C ha^?1). Greatest daily N₂O fluxes occurred when the soil was fallow, and following a series of summer rainfall events. Summer rainfall increased soil water contents and available N, and occurred when soil temperatures were >25 °C, and when there was no active plant growth to compete with soil microorganisms for mineralized N; conditions known to promote N₂O production. The proportion of N fertilizer emitted as N₂O, after correction for emissions from the no N fertilizer treatment, was 0.06%; 17 times lower than IPCC default value for the application of synthetic N fertilizers to land (1.0%). Soil greenhouse gas fluxes from bioenergy crop production in semi‐arid regions are likely to have less influence on the net global warming potential of biofuel production than in temperate climates.     

Nitrous oxide emissions from a cropped soil in a semi-arid climate

Understanding nitrous oxide (N₂O) emissions from agricultural soils in semi‐arid regions is required to better understand global terrestrial N₂O losses. Nitrous oxide emissions were measured from a rain‐fed, cropped soil in a semi‐arid region of south‐western Australia for one year on a sub‐daily basis. The site included N‐fertilized (100 kg N ha^?1 yr^?1) and nonfertilized plots. Emissions were measured using soil chambers connected to a fully automated system that measured N₂O using gas chromatography. Daily N₂O emissions were low (?1.8 to 7.3 g N₂O‐N ha^?1 day^?1) and culminated in an annual loss of 0.11 kg N₂O‐N ha^?1 from N‐fertilized soil and 0.09 kg N₂O‐N ha^?1 from nonfertilized soil. Over half (55%) the annual N₂O emission occurred from both N treatments when the soil was fallow, following a series of summer rainfall events. At this time of the year, conditions were conducive for soil microbial N₂O production: elevated soil water content, available N, soil temperatures generally >25 °C and no active plant growth. The proportion of N fertilizer emitted as N₂O in 1 year, after correction for the ‘background’ emission (no N fertilizer applied), was 0.02%. The emission factor reported in this study was 60 times lower than the IPCC default value for the application of synthetic fertilizers to land (1.25%), suggesting that the default may not be suitable for cropped soils in semi‐arid regions. Applying N fertilizer did not significantly increase the annual N₂O emission, demonstrating that a proportion of N₂O emitted from agricultural soils may not be directly derived from the application of N fertilizer. ‘Background’ emissions, resulting from other agricultural practices, need to be accounted for if we are to fully assess the impact of agriculture in semi‐arid regions on global terrestrial N₂O emissions.     

转录因子WRKY6和PR1在拟南芥胁迫记忆中的表达模式

植物暴露在细菌或其它微生物病原体下,会形成全身防御,称为系统获得性抗性SAR（Systemic Acquired Resistance）,该系统可以在病原体二次侵染时有效抑制病原体对植物的伤害。其中,WRKY转录因子和病程相关蛋白PRs（Pathogenesis-related proteins）在植物抗病信号调控途径中起着重要作用。本研究以模式植物拟南芥为实验材料,对WRKY6和PR1（PATHOGENESIS RELATED）两个转录因子进行初步研究。首先,从拟南芥eFP数据库中获得WRKY6和PR1的基因表达数据,进行生物信息学分析,获得WRKY6和PR1基因在不同胁迫条件下的表达热图。其次,通过实时荧光定量PCR技术,比较了经过生物胁迫和非生物胁迫处理后WRKY6和PR1的基因表达水平。结果表明,拟南芥经过生物胁迫丁香假单胞菌[Pseudomonas syringae pv.tomato（P_st） DC3000]处理后,WRKY6和PR1的基因表达模式具有一定的相似性,然而经过非生物胁迫和机械损伤组合处理后,WRKY6和PR1基因又呈现出不同的表达模式。本研究初步探索了WRKY6和PR1基因的表达模式及其关系,为今后进一步研究系统性获得抗性应答机制提供了思路。