Fine Structure of the Shell Wall in the Soil Testate Amoeba Cyclopyxis kahli (Rhizopoda)1

The common soil testate amoeba, Cyclopyxis kahli, is capable of building a complete organic shell when grown in culture in the absence of agglutinate material. Such shells are morphologically similar to agglutinate shells except in the structure and diameter of the aperture. Chemical analysis of organic shells suggests that the main inorganic elements present are calcium and iron. Comparisons are made with similar analyses of organic shells from other agglutinate species. This is the first report of a significant change in shell architecture due to agglutinate material.     

Compartmentation of glutamate metabolism in brain. Evidence for the existence of two different tricarboxylic acid cycles in brain

1. (14)C from [1-(14)C]glucose injected intraperitoneally into mice is incorporated into glutamate, aspartate and glutamine in the brain to a much greater extent than (14)C from [2-(14)C]glucose. This difference for [1-(14)C]glucose and [2-(14)C]glucose increases with time. The amount of (14)C in C-1 of glutamate increases steadily with time with both precursors. It is suggested that a large part of the glutamate and aspartate pools in brain are in close contact with intermediates of a fast-turning tricarboxylic acid cycle. 2. (14)C from [1-(14)C]acetate and [2-(14)C]acetate is incorporated to a much larger extent into glutamine than into glutamate. An examination of the time-course of (14)C incorporated into glutamine and glutamate reveals that glutamine is not formed from the glutamate pool, labelled extensively by glucose, but from a small glutamate pool. This small glutamate pool is not derived from an intermediate of a fast-turning tricarboxylic acid cycle. 3. It is proposed that two different tricarboxylic acid cycles exist in brain.     

A quantitative description of the forest vegetation on an altitudinal gradient in the Mount Field National Park,Tasmania, and a discussion of its history and dynamics

The aim of this study was to describe the forest vegetation along an altitudinal transect running from 158 m to 1220 m (treeline) in the Mount Field National Park, Tasmania. Eighteen 1 ha plots were sampled along this transect, using a modified point-centred quarter method for species composition and density. Size frequency distributions were used to calculate basal areas. Estimates of relative density, frequency and basal area for each species were combined in to an importance value. The altitudinal ranges of all woody species were determined. The altitudinal temperature lapse rate was measured, and data on soil pH obtained. The initial ‘direct gradient’ analysis revealed relatively well marked discontinuities in the vegetation which were further examined by ordination and classification techniques. The latter provided a simple threefold classification into altitudinal zones. The lower zone reaches from the Park entrance (158 m) to between 600 and 670 m, and comprises tall open forest dominated by Eucalyptus regnans and/or E. obliqua and with a ‘wet sclerophyll’ understorey characterized by Olearia argophylla. The middle zone stretches from c. 670 to 940 m and comprises closed rainforest or ‘mixed’ forest (i.e. with senescent emergent eucalypts) dominated by Nothofagus cunning hamii and Atherosperma moschatum. This zone is characterized by the absence of O. argophylla and the presence of Phyllocladus aspleniifolius. The upper part of this zone constitutes an interdigitating transition to the subalpine forests, usually dominated by E. coccifera and occurring on suitable sites between c. 880 m and the timberline. The transition to subalpine forests is associated with a marked decline in basal area. Species richness (of woody plants) increases with altitude to reach a peak in the sub-alpine zone. This trend is the reverse of that normally encountered elsewhere in the world, and is mainly due to relatively high α and β diversities in the shrub stratum of this zone. The significance of fires, aspect and substrate is discussed in relation to the variations in composition within each zone. The low diversity of Nothofagus-dominated rainforest is thought to be due, in part, to the intense competitive thinning in the eucalypt re-growth phase following burning, and the subsequent ‘capture’ of the Eucalyptus niche by Nothofagus. It is speculated that, in Tasmania, the downhill migrations during the cooling phases of the Pleistocene were associated with extinctions of lowland forest taxa, while uphill migrations during warming phases were associated with speciation on the plateaux of the present subalpine zone. This hypothesis implies that the relative proportions of land area available at different altitudes, now and in the past, have determined the relative rates of speciation and extinction, and hence the altitudinal gradients of species richness.     

<Emphasis Type="Italic">Pseudomonas aeruginosa</Emphasis> inhibits <Emphasis Type="Italic">in-vitro Candida</Emphasis> biofilm development

Background  

Elucidation of the communal behavior of microbes in mixed species biofilms may have a major impact on understanding infectious diseases and for the therapeutics. Although, the structure and the properties of monospecies biofilms and their role in disease have been extensively studied during the last decade, the interactions within mixed biofilms consisting of bacteria and fungi such as Candida spp. have not been illustrated in depth. Hence, the aim of this study was to evaluate the interspecies interactions of Pseudomonas aeruginosa and six different species of Candida comprising C. albicans, C. glabrata, C. krusei, C. tropicalis, C. parapsilosis, and C. dubliniensis in dual species biofilm development.     

Association of 25-Hydroxyvitamin D status and genetic variation in the vitamin D metabolic pathway with FEV1 in the Framingham Heart Study

Background

Vitamin D is associated with lung function in cross-sectional studies, and vitamin D inadequacy is hypothesized to play a role in the pathogenesis of chronic obstructive pulmonary disease. Further data are needed to clarify the relation between vitamin D status, genetic variation in vitamin D metabolic genes, and cross-sectional and longitudinal changes in lung function in healthy adults.

Methods

We estimated the association between serum 25-hydroxyvitamin D [25(OH)D] and cross-sectional forced expiratory volume in the first second (FEV₁) in Framingham Heart Study (FHS) Offspring and Third Generation participants and the association between serum 25(OH)D and longitudinal change in FEV₁ in Third Generation participants using linear mixed-effects models. Using a gene-based approach, we investigated the association between 241 SNPs in 6 select vitamin D metabolic genes in relation to longitudinal change in FEV₁ in Offspring participants and pursued replication of these findings in a meta-analyzed set of 4 independent cohorts.

Results

We found a positive cross-sectional association between 25(OH)D and FEV₁ in FHS Offspring and Third Generation participants (P = 0.004). There was little or no association between 25(OH)D and longitudinal change in FEV₁ in Third Generation participants (P = 0.97). In Offspring participants, the CYP2R1 gene, hypothesized to influence usual serum 25(OH)D status, was associated with longitudinal change in FEV₁ (gene-based P < 0.05). The most significantly associated SNP from CYP2R1 had a consistent direction of association with FEV₁ in the meta-analyzed set of replication cohorts, but the association did not reach statistical significance thresholds (P = 0.09).

Conclusions

Serum 25(OH)D status was associated with cross-sectional FEV₁, but not longitudinal change in FEV₁. The inconsistent associations may be driven by differences in the groups studied. CYP2R1 demonstrated a gene-based association with longitudinal change in FEV₁ and is a promising candidate gene for further studies.

Electronic supplementary material

The online version of this article (doi:10.1186/s12931-015-0238-y) contains supplementary material, which is available to authorized users.     

Niche segregation and genetic structure of Campylobacter jejuni populations from wild and agricultural host species

Bacterial populations can display high levels of genetic structuring but the forces that influence this are incompletely understood. Here, by combining modelling approaches with multilocus sequence data for the zoonotic pathogen Campylobacter, we investigated how ecological factors such as niche (host) separation relate to population structure. We analysed seven housekeeping genes from published C. jejuni and C. coli isolate collections from a range of food and wild animal sources as well as abiotic environments. By reconstructing genetic structure and the patterns of ancestry, we quantified C. jejuni host association, inferred ancestral populations, investigated genetic admixture in different hosts and determined the host origin of recombinant C. jejuni alleles found in hybrid C. coli lineages. Phylogenetically distinct C. jejuni lineages were associated with phylogenetically distinct wild birds. However, in the farm environment, phylogenetically distant host animals shared several C. jejuni lineages that could not be segregated according to host origin using these analyses. Furthermore, of the introgressed C. jejuni alleles found in C. coli lineages, 73% were attributed to genotypes associated with food animals. Our results are consistent with an evolutionary scenario where distinct Campylobacter lineages are associated with different host species but the ecological factors that maintain this are different in domestic animals such that phylogenetically distant animals can harbour closely related strains.