Spike protein oligomerization control of Semliki Forest virus fusion.

We have recently shown, using cleavage-deficient mutants of the p62-E1 membrane protein complex of Semliki Forest virus that p62 cleavage to E2 is necessary for the activation of the fusion function of the complex at pH 5.8 (a pH optimal for virus fusion) (M. Lobigs and H. Garoff, J. Virol. 64:1233-1240, 1990). In this study, we show that the mutant precursor complexes can be induced to activate membrane fusion when treated with more acidic buffers (pH 5.0 and 4.5), which also appear to dissociate most of the p62-E1 complexes and change the conformation of the E1 subunit (the supposed fusion protein of Semliki Forest virus into a form which is resistant to trypsin digestion. These data suggest that p62 cleavage is not essential for membrane fusion per se but that the crucial event activating this process seems to be the apparent dissociation of the heterodimer, which in turn is facilitated by the spike precursor cleavage.     

Rapid colorimetric detection of in vitro amplified DNA sequences

A colorimetric assay to detect immobilized amplified nucleic acids has been designed. This approach provides a rapid assay, suitable for clinical diagnosis, to analyze DNA sequences amplified by the polymerase chain reaction. The specific DNA sequences are captured on a solid support by the use of a recombinant fusion protein consisting of the Escherichia coli lac repressor and staphylococcal protein A. The biotin streptavidin system is used to detect the immobilized material. Positive samples can be analyzed by direct solid-phase sequencing. Here, we show that this nonradioactive concept can be used for analysis of Staphylococci and Streptococci and for specific detection of the protozoa Plasmodium falciparum in clinical samples.     

Testing 'Economy in Design' in Plants: are the Petioles and Rachises of Leaves 'Designed' According to the Principle of Uniform Strength?

Fifteen petioles and rachises from three dicotyledon species(Acer saccharum, A. negundo, and Aesculus hippocastanum), apalm (Chamaedorea erumpens), and a fern (Cyrtomium falcatum)were used to test the hypothesis of 'economy in design' in termsof the design principle of uniform strength, i.e. a beam inwhich the section modulus (Z) varies along beam-length (L) inthe same proportion as the bending moment (M). Such a beam is'economical' regarding the amount of material used in its 'construction'because each of its cross section has the minimum transversearea required to satisfy the conditions of strength. The extentto which the morphology of a petiole or rachis conformed withthis design principle was initially evaluated by normalizingZ (measured at a distance, x, from the tip of a petiole or rachis)with respect to the magnitude of Z measured at the base of thepetiole. The normalized values were plotted against normalizedpetiole-rachis length (x/L). The design principle was judgedto be demonstrated when such a plot was found to be isometric,i.e. when the plot had a slope of unity. This procedure wastested further by plotting M/Z vs. x/L for representative leavesof C. erumpens and A. saccharum, and judged adequate. The allometriesof all six simple/palmate leaves were found not agree with thedesign principle. The taperings of nine petioles and rachisesfrom pinnate leaves were consistent with the design principle.This was interpreted to provide circumstantial evidence for'economy in design' in the petioles of some pinnate leaves andevidence that the mechanical 'design' of the petioles of somesimple/palmate leaves differs substantially from that of pinnateleaves.Copyright 1993, 1999 Academic Press Leaf biomechanics, plant adaptation, petioles, rachises     

GRAVITY-INDUCED EFFECTS ON MATERIAL PROPERTIES AND SIZE OF LEAVES ON HORIZONTAL SHOOTS OF ACER SACCHARUM (ACERACEAE)

The influence of gravity on the size and mechanical properties of mature leaves on horizontal shoots and etiolated seedlings of Acer saccharum Marsh. (Aceraceae) was examined. Leaves were grouped into three categories regarding their location on shoots (dorsal or “top” T, lateral or “left/right” L/R, and ventral or “bottom” B). Young's modulus E, petiole length L, lamina surface area A and weight P, and the cross-sectional areas of different tissues within petioles were measured for each leaf and were found to be correlated with leaf location (T, L/R, and B): T leaves were smaller and had lower E than their B counterparts; the size and material properties of L/R leaves were intermediate between those of T and B leaves. In general, A, P, and E decreased from the base to the tip of shoots. In addition to anisophylly, the influence of gravity induced petiole bending and torsion and resulted in the horizontal planation of laminae. This was observed for field-grown mature plants and etiolated seedlings. Petiole bending and torsion were interpreted as gravimorphogenetic phenomena. Anatomically, L, E, and petiole deflection angle Fv measured from the vertical were highly correlated with the combined cross-sectional areas of phloem fibers and xylem in petioles of B leaves and when data from all leaves were pooled. It is tentatively advanced that the correlation of E with the transverse areas of phloem fibers and xylem is evidence that either the pattern or the extent of lignification of petiole tissues is influenced by petiole position with respect to gravity.     

A unique variant of streptococcal group O-antigen (C-polysaccharide) that lacks phosphocholine.

Streptococcus mitis strain SK598, which represents a subgroup of biovar 1, possesses a unique variant of the C-polysaccharide found in the cell wall of all strains of Streptococcus pneumoniae and in some strains of S. mitis. This new variant lacks the choline methyl groups in contrast to the previously characterized forms of C-polysaccharide, which all contain one or two choline residues per repeat. The following structure of the repeating unit of the SK598 polysaccharide was established: where AAT is 2-acetamido-4-amino-2,4,6-trideoxy-d-galactose. This structure is identical to the double choline-substituted form of C-polysaccharide, except that it is substituted with ethanolamine instead of choline. This extends the number of recognized C-polysaccharide variants to four.     

Sequence analysis of an actin isoform in the flatworm Diphyllobothrium dendriticum (Cestoda)

We have examined actin cDNA of the flatworm Diphyllobothrium dendriticum (Cestoda). Actin is a contractile protein that has been implicated in a variety of developmental and cellular processes. It is highly conserved and present in all eukaryotic cells. It is of particular interest to analyze evolutionary preserved genes in flatworms, because ancestral flatworms are regarded to play a central role in the evolution of the metazoans (Barnes et al., 1998). Screening a cDNA library of D. dendriticum (UniZap XR, Stratagene) with a human -actin probe resulted in several positive clones. One of the cDNA inserts, Didactl, consisting of 1392 bp was completely sequenced. The established nucleotide sequence revealed a 5 untranslated region of 33 bp, the entire open reading frame of 1128 bp and a 3 untranslated region of 231 bp which ends in a stretch of 21 A residues. The potential polyadenylation signal (AATAAA) is located 14 bp upstream of the poly (A) tail. The deduced amino acid sequence of Didactl is 376 amino acids long. It is a typical invertebrate actin (Fyrberg et al., 1981) resembling more the cytoplasmic than the muscular isoforms of vertebrate actins. Didactl is for example 96% homologous to human cytoplasmic -actin but only 92.6% identical with human smooth muscle -actin. The actin proteins are generally encoded by a multigene family which differs in size from species to species. Most organisms have four to eight genes coding for actin in their genome, but the number of actin genes can also be over 20 (Hamelin et al., 1988). Sequence comparisons of Didactl and the partly sequenced cDNA clones indicate that D. dendriticum has at least four different genes coding for actin in its genome.     

Isolation and Characterization of Five Actin cDNAs from the Cestode Diphyllobothrium dendriticum: A Phylogenetic Study of the Multigene Family

Five cDNAs (pDidact2–pDidact6), representing different actin genes, were isolated from a Diphyllobothrium dendriticum cDNA library, and the DNA as well as the putative amino acid sequences were determined. The corresponding Didact2 and Didact4 genes code for peptides 376 amino acids long, with molecular weights 41,772 and 41,744 Da, respectively, while the deduced Didact3 protein is 377 amino acids long and weighs 41,912 Da. The pDidact5 and -6 cDNAs lack nucleotides corresponding to three to six amino acids at the amino-terminus. Two of the five cDNAs contain the conventional AATAAA as the putative polyadenylation signal, one has the common variant ATTAAA, whereas the hexanucleotide AATAGA is found 15 and 18 nucleotides, respectively, upstream of the poly(A) site in two of the cDNAs. Phylogenetic studies including 102 actin protein sequences revealed that there are at least four different types of cestode actins. In this study three of these types were found to be expressed in the adult D. dendriticum tapeworm. Structurally the cestode actin groupings differ from each other to an extent seen only among the metazoan actins between the vertebrate muscle and cytoplasmic isoforms. In the phylogenetic trees constructed, cestode actins were seen to map to two different regions, one on the border of the metazoan actins and the other within this group. It is, however, difficult to say whether the cestode actins branched off early in the metazoan evolution or if this position in the phylogenetic tree only reflects upon differences in evolutionary rate. Received: 19 June 1996 / Accepted: 20 August 1996     

Semi-automated solid-phase DNA sequencing.

Increasing the efficiency of DNA sequencing necessitates the development of systems which reduce the need for manual operations by integrating template preparation, sequencing reactions, product separation and detection. A semi-automated system, whereby PCR-amplified biotinylated genomic or plasmid DNA is immobilized on streptavidin-coated magnetic beads, has been developed.     

An artificial bifunctional enzyme, γ-glutamyl kinase/γ-glutamyl phosphate reductase, improves NaCl tolerance when expressed in Escherichia coli

Summary An artificial bifunctional enzyme, -glutamyl kinase/-glutamyl phosphate reductase, was obtained by fusing the Escherichia coli genes proA and proB. The proB gene was fused to the 5-end of the proA gene with a linker encoding five amino acids. When expressed in E. coli enhanced intracellular concentrations of proline were observed. At 0.6 M NaCl the growth rates for the strain carrying the fusion enzyme and a control harbouring a plasmid encoding the wild-type enzymes were 320 and 530 min, respectively.