Isolation of polymorphic tetranucleotide microsatellite markers for the ornate nursery frog Cophixalus ornatus

We have isolated 18 polymorphic microsatellite loci for Cophixalus ornatus from genomic libraries enriched for (AAAG)_n, (AACC)_n and (AAGG)_n repetitive elements. The number of alleles ranges from five to 22 per locus with the observed heterozygosity ranging from 0.10 to 0.92. These markers will be useful for the analysis of population structure in C. ornatus and testing alternative models of speciation.     

Evolutionary mode of the ostracod,Velatomorpha altilis,from the Joggins Fossil Cliffs UNESCO World Heritage Site

Grey, M., Finkel, Z.V., Pufahl, P.K. & Reid, L.M. 2012: Evolutionary mode of the ostracod, Velatomorpha altilis, at the Joggins Fossil Cliffs UNESCO World Heritage Site. Lethaia, Vol. 45, pp. 615–623. The estuarine ostracod Velatomorpha altilis was analysed for size and shape changes over a 2–3 million‐year interval within a portion of the Joggins Fossil Cliffs World Heritage Site. This represents one of a very few number of studies focused on evolutionary trends within marginal environments and contributes to a growing body of research that attempts to link evolutionary patterns with processes. We measured nearly 400 ostracod specimens and used a quantitative model‐based test to assess mode of evolution. Samples of ostracods were also analysed for their stable oxygen and carbon isotopic compositions in an attempt to supplement paleoenvironmental interpretations. Stasis was the strongly supported model for mode of evolution in both size and shape metrics, lending support to previous hypotheses that organisms from fluctuating, and therefore stressed, environments, should exhibit stasis because they are genetically well adapted to environmental change over geological time‐scales. Stable isotopic compositions indicate samples were diagenetically altered and thus do not preserve a primary signature of paleoenvironmental conditions. Future work should look to other marginal organisms to test whether stasis is indeed a trend in these types of environments. □Carboniferous, estuarine ostracod, environment, evolutionary mode.     

Asymmetric impacts of two herbivore ecotypes on similar host plants

1. Ecotypes may arise following allopatric separation from source populations. The simultaneous transfer of an exotic plant to a novel environment, along with its stenophagous herbivore, may complicate more traditional patterns of divergence from the plant and insect source populations. 2. The present study evaluated herbivory effects by two Cyrtobagous salviniae ecotypes on two species of Salvinia: the larger S. molesta and the smaller S. minima. Evaluations were based on relative growth rates, biomass production, coverage, and nutrient cycling in a series of complementary and comparative laboratory and outdoor tank experiments. 3. In general, the experiment results indicated that the smaller Florida ecotype of C. salviniae impacted both Salvinia species more than the larger Brazil ecotype. Herbivory, especially by the Florida ecotype, also improved water quality and accelerated nutrient cycling by increasing the rates of litterfall from the standing crops of salvinia. 4. The smaller size of the Florida ecotype may be adaptive by allowing maximal exploitation of host plants via internal larval feeding, which presumably reduces predation risk while increasing damage to the plant. These findings provide support for relying on the suppressive effects of the Florida ecotype in Florida, rather than introducing the Brazil ecotype to counter new infestations of S. molesta.     

Impact of migratory snow geese on nitrogen and phosphorus dynamics in a freshwater reservoir

1. We examined impacts of nutrient loading, particularly of nitrogen and phosphorus, from greater snow geese (Chen caerulescens atlantica) on a reservoir in south‐eastern Pennsylvania, U.S.A. Approximately 100 000 geese use the reservoir for 2–6 weeks prior to their spring migration northward. 2. We estimated the magnitude of nutrient loading by geese during their presence and compared that to surface input and output rates. We also conducted nutrient limitation bioassay experiments to examine patterns of algal nutrient limitation upstream and downstream of the reservoir. 3. During their presence from 1 February to 27 March 2001, snow geese contributed 85–93% of the phosphorus and 33–44% of the nitrogen loaded to the reservoir. Both nutrients were exported from the reservoir slowly rather than as a quick pulse. Consequently, phosphorus concentrations in the outflow were higher than in the inflow from February to the end of July. However, nitrogen concentrations were consistently lower in the outflow than the inflow. 4. Nutrient limitation bioassays conducted in June and July indicated that primary production in the outflow was limited by nitrogen whereas the inflow was co‐limited by nitrogen and phosphorus. Further downstream from the reservoir, primary production was consistently phosphorus limited. Therefore, nitrogen limitation persisted long after the geese had left, but was relatively localised.     

Highly accurate SNP genotyping from historical and low‐quality samples

Historical and other poor‐quality samples are often necessary for population genetics, conservation, and forensics studies. Although there is a long history of using mtDNA from such samples, obtaining and genotyping nuclear loci have been considered difficult and error‐prone at best, and impossible at worst. The primary issues are the amount of nuclear DNA available for genotyping, and the degradation of the DNA into small fragments. Single nucleotide polymorphisms offer potential advantages for assaying nuclear variation in historical and poor‐quality samples, because the amplified fragments can be very small, varying little or not at all in size between alleles, and can be amplified efficiently by polymerase chain reaction (PCR). We present a method for highly multiplexed PCR of SNP loci, followed by dual‐fluorescence genotyping that is very effective for genotyping poor‐quality samples, and can potentially use very little template DNA, regardless of the number of loci to be genotyped. We genotyped 19 SNP loci from DNA extracted from modern and historical bowhead whale tissue, bone and baleen samples. The PCR failure rate was < 1.5%, and the genotyping error rate was 0.1% when DNA samples contained > 10 copies/µL of a 51‐bp nuclear sequence. Among samples with ≤ 10 copies/µL DNA, samples could still be genotyped confidently with appropriate levels of replication from independent multiplex PCRs.     

Non-random distribution among a guild of parasitoids: implications for community structure and host survival

Abstract 1. Immature stages of the gall midge, Asphondylia borrichiae, are attacked by four species of parasitoids, which vary in size and relative abundance within patches of the gall midge’s primary host plant, sea oxeye daisy (Borrichia frutescens). 2. In the current study, a bagging experiment found that the smallest wasp, Galeopsomyia haemon, was most abundant in galls exposed to natural enemies early in the experiment, when gall diameter is smallest, while the wasp with the longest ovipositor, Torymus umbilicatus, dominated the parasitoid community in galls that were not exposed until the 5th and 6th weeks when gall diameter is maximal. 3. Moreover, the mean number of parasitoids captured using large artificial galls were 70% and 150% higher compared with medium and small galls respectively, while stem height of artificial galls significantly affected parasitoid distribution. Galls that were level with the top of the sea oxeye canopy captured 60% more parasitoids compared with those below the canopy and 50% more than galls higher than the plant canopy. 4. These non‐random patterns were driven primarily by the differential distribution of the largest parasitoid, T. umbilicatus, which was found significantly more often than expected on large galls and the smallest parasitoid of the guild, G. haemon, which tended to be more common on stems level with the top of the plant canopy. 5. Large Asphondylia galls, especially those located near the top of the Borrichia canopy, were more likely to be discovered by searching parasitoids. Results using artificial galls were consistent with rates of parasitism of Asphondylia galls in native patches of sea oxeye daisy. Gall diameter was 19% greater and the rate of parasitism was reduced by almost 50% on short stems; as a result, gall abundance was 24% higher on short stems compared with ones located near the top of the plant canopy. 6. These results suggest that parasitoid community composition within galls is regulated by both interspecific differences in ovipositor length and preferences for specific gall size and/or stem length classes.     

Developmental instability: measures of resistance and resilience using pumpkin (Cucurbita pepo L.)

Fluctuating asymmetry measures random deviations from bilateral symmetry, and thus estimates developmental instability, the loss of ability by an organism to regulate its development. There have been few rigorous tests of this proposition. Regulation of bilateral symmetry must involve either feedback between the sides or independent regulation toward a symmetric set point. Either kind of regulation should decrease asymmetry over time, but only right–left feedback produces compensatory growth across sides, seen as antipersistent growth following perturbation. Here, we describe the developmental trajectories of perturbed and unperturbed leaves of pumpkin, Cucurbita pepo L., grown at three densities. Covering one side of a leaf with aluminium foil for 24 h perturbed leaf growth. Reduced growth on the perturbed side caused leaves to become more asymmetrical than unperturbed controls. After the treatment the size-corrected asymmetry decreased over time. In addition, rescaled range analysis showed that asymmetry was antipersistent rather than random, i.e. fluctuation in one direction was likely to be followed by fluctuations in the opposite direction. Development involves right–left feedback. This feedback reduced size-corrected asymmetry over time most strongly in the lowest density treatment suggesting that developmental instability results from a lack of resilience rather than resistance.   © 2003 The Linnean Society of London, Biological Journal of the Linnean Society , 2003, 78, 27–41.