Conserved water-mediated H-bonding dynamics of catalytic Asn 175 in plant thiol protease

The role of invariant water molecules in the activity of plant cysteine protease is ubiquitous in nature. On analysing the 11 different Protein DataBank (PDB) structures of plant thiol proteases, the two invariant water molecules W1 and W2 (W220 and W222 in the template 1PPN structure) were observed to form H-bonds with the O_b atom of Asn 175. Extensive energy minimization and molecular dynamics simulation studies up to 2 ns on all the PDB and solvated structures clearly revealed the involvement of the H-bonding association of the two water molecules in fixing the orientation of the asparagine residue of the catalytic triad. From this study, it is suggested that H-bonding of the water molecule at the W1 invariant site better stabilizes the Asn residue at the active site of the catalytic triad.     

Impact of chromate and dichromate on lysozyme stability: A spectroscopic and molecular docking investigation

A comparative study of interaction between chicken egg white lysozyme (Lyz) with two hexavalent chromate ions; chromate and dichromate; which are prevalently known for their toxicity, was investigated using different spectroscopic techniques along with a molecular docking study. Both steady-state and time-resolved studies revealed that the addition of chromate/dichromate is responsible for strong quenching of intrinsic fluorescence in Lyz and the quenching is caused by both static and dynamic quenching mechanisms. Different binding and thermodynamic parameters were also calculated at different temperatures from the intrinsic fluorescence of Lyz. The conformational change in Lyz and thermodynamic parameters obtained during the course of interaction with chromate/dichromate were well-supported by the molecular docking results.     

A genetic overhaul of <Emphasis Type="Italic">Saccharomyces cerevisiae</Emphasis> 424A(LNH-ST) to improve xylose fermentation

Robust microorganisms are necessary for economical bioethanol production. However, such organisms must be able to effectively ferment both hexose and pentose sugars present in lignocellulosic hydrolysate to ethanol. Wild type Saccharomyces cerevisiae can rapidly ferment hexose, but cannot ferment pentose sugars. Considerable efforts were made to genetically engineer S. cerevisiae to ferment xylose. Our genetically engineered S cerevisiae yeast, 424A(LNH-ST), expresses NADPH/NADH xylose reductase (XR) that prefer NADPH and NAD⁺-dependent xylitol dehydrogenase (XD) from Pichia stipitis, and overexpresses endogenous xylulokinase (XK). This strain is able to ferment glucose and xylose, as well as other hexose sugars, to ethanol. However, the preference for different cofactors by XR and XD might lead to redox imbalance, xylitol excretion, and thus might reduce ethanol yield and productivity. In the present study, genes responsible for the conversion of xylose to xylulose with different cofactor specificity (1) XR from N. crassa (NADPH-dependent) and C. parapsilosis (NADH-dependent), and (2) mutant XD from P. stipitis (containing three mutations D207A/I208R/F209S) were overexpressed in wild type yeast. To increase the NADPH pool, the fungal GAPDH enzyme from Kluyveromyces lactis was overexpressed in the 424A(LNH-ST) strain. Four pentose phosphate pathway (PPP) genes, TKL1, TAL1, RKI1 and RPE1 from S. cerevisiae, were also overexpressed in 424A(LNH-ST). Overexpression of GAPDH lowered xylitol production by more than 40%. However, other strains carrying different combinations of XR and XD, as well as new strains containing the overexpressed PPP genes, did not yield any significant improvement in xylose fermentation.     

Nectar and Pollen Sources for Honeybee （Apis cerana cerana Fabr.） in Qinglan Mangrove Area, Hainan Island, China

In the present study, nectar and pollen sources for honeybee （Apls cerana cerana Fabr.） were studied in Qlnglan mangrove area, Hainan Island, China, based on microscopic analysis of honey and pollen load （corblcular and gut contents） from honeybees collected In October and November 2004. Qualitative and quantitative melittopalynologlcal analysis of the natural honey sample showed that the honey is of unlfloral type with Mimosa pudlca L. （Mlmosaceae） as the predominant （89.14%） source of nectar and pollen for A. cerana cerana In October. Members of Araceae are an Important minor （3%-15%） pollen type, whereas those of Arecaceae are a minor （〈3%） pollen type. Pollen grains of Nypa fruticans Wurmb., Rhlzophora spp., Excoecarla agallocha L., Lumnitzera spp., Brugulera spp., Kandella candel Druce, and Ceriops tagal （Perr.） C. B. Rob. are among the notable mangrove texa growing In Qinglan mangrove area recorded as minor taxa In the honey. The absolute pollen count （I.e. the number of pollen grains/10 g honey sample） suggests that the honey belongs to Group V （〉1 000 000）. Pollen analysis from the corblcular and gut contents of A. cerana cerana revealed the highest representation （95.60%） of members of Sonneratia spp. （Sonneratlaceae）, followed by Bruguiera spp. （Rhizophoraceae）, Euphorblaceae, Poaceae, Fabaceae, Arecaceae, Araceae, Anacardlaceae, and Rublaceae. Of these plants, those belonging to Sonneratla plants are the most Important nectar and pollen sources for A. cerana cerana and are frequently foraged and pollinated by these bees in November.     

Iron(III) induced 2-phenyl imidazolidine ring hydrolysis of a new binucleating Schiff base ligand: X-ray structure of the mononuclear Fe(NNO)2 end product

The reaction of triethylenetetramine, salicylaldehyde and benzaldehyde in 1:2:1 mole ratio in methanol at room temperature affords a novel μ-bis(tridentate) ligand H₂L′ through the formation of an imidazolidine ring within the parent hexadentate precursor in a two step reaction. The ligand H₂L′ reacts with Fe(ClO₄)₂ · 6H₂O in aqueous methanol in the presence of triethylamine to form the mononuclear [Fe^IIIL](ClO₄) complex, (where L²⁻ is the anion of the parent hexadentate H₂saltrien ligand) after the cleavage of the imidazolidine ring. The mononuclear complex has a structure with an N₄O₂ donor atom set of the hexadentate ligand forming a distorted octahedral coordination geometry around the metal atom as established from a crystal structure determination. The Fe-N(imine) distances are 1.934(10) and 1.948(9) Å, Fe-N(amine) distances are 2.062(8) and 2.076(9) Å and Fe-O(phenol) distances are 1.864(8) and 1.872(7) Å. The terminal oxygen donor atoms occupy cis positions and the remaining four nitrogen atoms (two cis amine and two trans imine) complete the coordination sphere. The mononuclear complex has a magnetic moment 1.89 μ_B corresponding to the low-spin 3d⁵ configuration. The UV-Vis spectrum of the end product, after the imidazolidine ring hydrolysis, is different from the spectrum of the initial reaction mixture containing the μ-bis(tridentate) ligand H₂L′.     

Seed hairs of poplar trees as natural airborne pollen trap for allergenic pollen grains

The present article deals with the efficacy of seed hairs of poplar trees (Populus spp.) as a potent natural airborne pollen trap. Different species of Populus are commonly found planted along the streets in the cities of North China. The seed hairs and pericarp of poplar trees were collected from the trees and on the ground in Beijing Botanical Garden of Chinese Academy of Sciences and around Miyun Reservoir during May 2005 for pollen analysis. Different pollen spectra are recorded from different samples and are characterised by dominant occurrence of pollen grains of arboreal and anemophilous plants. In addition, pollen grains of non‐arboreal plants including grasses are also found trapped. Among the 46 trapped pollen grains, 26 are known to be allergenic. This study suggests that poplar seed hairs possibly make people feel uncomfortable due to the presence of allergenic pollen trapped in the hairs.     

Risk of Becoming Schizophrenic: Birth Order and HLA Profile

The present study was carried out to ascertain the birth order as a risk factor for schizophrenia on the basis of HLA genetics. India born schizophrenic patients of Siliguri, West Bengal who attended Outpatient Department of Psychiatry, North Bengal Medical College and Hospital were included in the study. After longitudinal follow up of 136 patients and 150 controls matched in age, sex and ethnicity were screened for the study. The typing of HLA was done by PCR-SSP method. The results showed a significantly increased frequency of HLA*A3 among the patients. Further, birth order was studied among HLA*A3 positive 108 patients and 41 controls. Although, results indicated higher incidence of schizophrenia among second children irrespective of sex but it was not found to be statistically significant. However, when the birth order of male and female patients was analyzed separately, a significant decreased incidence of schizophrenia was observed among the third female child. The findings do not corroborate with the earlier findings of association of birth order with schizophrenia.