Orexinergic Neurotransmission in Temperature Responses to Methamphetamine and Stress: Mathematical Modeling as a Data Assimilation Approach

Experimental Data

Orexinergic neurotransmission is involved in mediating temperature responses to methamphetamine (Meth). In experiments in rats, SB-334867 (SB), an antagonist of orexin receptors (OX1R), at a dose of 10 mg/kg decreases late temperature responses (t>60 min) to an intermediate dose of Meth (5 mg/kg). A higher dose of SB (30 mg/kg) attenuates temperature responses to low dose (1 mg/kg) of Meth and to stress. In contrast, it significantly exaggerates early responses (t<60 min) to intermediate and high doses (5 and 10 mg/kg) of Meth. As pretreatment with SB also inhibits temperature response to the stress of injection, traditional statistical analysis of temperature responses is difficult.

Mathematical Modeling

We have developed a mathematical model that explains the complexity of temperature responses to Meth as the interplay between excitatory and inhibitory nodes. We have extended the developed model to include the stress of manipulations and the effects of SB. Stress is synergistic with Meth on the action on excitatory node. Orexin receptors mediate an activation of on both excitatory and inhibitory nodes by low doses of Meth, but not on the node activated by high doses (HD). Exaggeration of early responses to high doses of Meth involves disinhibition: low dose of SB decreases tonic inhibition of HD and lowers the activation threshold, while the higher dose suppresses the inhibitory component. Using a modeling approach to data assimilation appears efficient in separating individual components of complex response with statistical analysis unachievable by traditional data processing methods.     

Retinol kinetics in unsupplemented and vitamin A-retinoic acid supplemented neonatal rats: a preliminary model

Vitamin A (VA) metabolism in neonates is virtually uncharacterized. Our objective was to develop a compartmental model of VA metabolism in unsupplemented and VA-supplemented neonatal rats. On postnatal day 4, pups (n = 3/time) received 11,12-[³H]retinol orally, in either oil (control) or VA combined with retinoic acid (VARA) [VA (∼6 mg/kg body weight) + 10% retinoic acid]. Plasma and tissues were collected at 14 time points up to 14 days after dose administration. VARA supplementation rapidly, but transiently, increased total retinol mass in plasma, liver, and lung. It decreased the peak fraction of the dose in plasma. A multi-compartmental model developed to fit plasma [³H]retinol data predicted more extensive recycling of retinol between plasma and tissues in neonates compared with that reported in adults (144 vs. 12–13 times). In VARA pups, the recycling number for retinol between plasma and tissues (100 times) and the time that retinol spent in plasma were both lower compared with controls; VARA also stimulated the uptake of plasma VA into extravascular tissues. A VARA perturbation model indicated that the effect of VARA in stimulating VA uptake into tissues in neonates is both dramatic and transient.     

Homeotic Sexual Translocations and the Origin of Maize (Zea Mays, Poaceae): A New look at an old problem

In the Origin of Maize Controversy, the Orthodox Teosinte Hypothesis (OTH; Beadle 1939, 1972; Iltis 1971), five key mutations change 2-ranked (distichous) ears of teosinte (wild Zea) with a single row of grains per rank to 4- to many-ranked (polystichous) maize ears with a double row of grains per rank. BUT teosinte ears are lateral to the 1° branch axes, maize ears, like their male homologues, the teosinte I° branch tassel spikes, terminal, an enigma long unrecognized, hence ignored. In the Catastrophic Sexual Transmutation Theory (CSTT; Iltis 1983b, 1987), now abandoned, the I° branch tassel (male) of teosinte (spikelets soft-glumed, paired, i.e., double-rowed per rank, as in maize ears), when brought under female hormonal control by branch condensation, becomes feminized into a maize proto-ear. BUT lateral ears should then have remained teosintoid (2-ranked, each rank with a single row of grains), yet are in fact double-rowed. Combining OTH and CSTT, the new Sexual Translocation Theory (STLT) is based on: first, the branching pattern of teosinte ear clusters (Cámara-H. & Gambino 1990), sequentially maturing, sympodially branching, typically Andropogonoid systems, called rhipidia (sing, rhipidium), where each higher order (younger) ear originates as a lateral branch of its lower order, earlier maturing predecessor; and second, on 3 or 4 key mutations [cupule reduction, softening of glumes, doubling of female spikelets], which, by projecting outward the grains, invited human domestication by making them accessible. Within each ear cluster, the earliest maturing, hence nutrient-monopolizing and largest ear would be selected, all younger ears, already nutrientinhibited, suppressed. As fewer, larger ears evolved, and branch internode condensation moved male tassels into female hormonal zones, homeotic conversions translocated female morphology to terminal male positions: first replacing each of the II° branch tassels, and ultimately the 1° branch tassel (male), with an ear (female). With this, now female structure in the apically dominant, hence most nutrient-demanding terminal position gradually suppressing all subsidiary ears on the 1° branch beneath it, mutations for polystichy (contingent on nutrient overload) were finally allowed to become expressed, and the multi-rowed maize ear (at first with an atavistic male tail) evolved. Favored by human selection, these increases in apical dominance by stepwise homeotic sexual conversions explain both archeological and morphological realities, but need to be harmonized with recent results of developmental genetics. Current evidence suggests that teosinte was first tended for its green ears and sugary pith by hunter-gatherers as an occasional rainy-season food in small “garden” populations away from its homeland, and not for its abundant grain-containing, hard fruitcases, which easily mass-collected but useless as food, are as yet unknown from the archeological record. A rare grain-liberating teosinte mutation (probably expressed in only one “founder” plant, a mazoid “Eve”), which exposed the encased grain for easy harvest, was soon recognized as useful, collected and planted (or self-planted). Thus maize was started on its way to a unique horticultural domestication that is not comparable to that of the temperate Old World mass-selected agricultural grains.     

Energy Return on Investment (EROI) for Forty Global Oilfields Using a Detailed Engineering-Based Model of Oil Production

Studies of the energy return on investment (EROI) for oil production generally rely on aggregated statistics for large regions or countries. In order to better understand the drivers of the energy productivity of oil production, we use a novel approach that applies a detailed field-level engineering model of oil and gas production to estimate energy requirements of drilling, producing, processing, and transporting crude oil. We examine 40 global oilfields, utilizing detailed data for each field from hundreds of technical and scientific data sources. Resulting net energy return (NER) ratios for studied oil fields range from ≈2 to ≈100 MJ crude oil produced per MJ of total fuels consumed. External energy return (EER) ratios, which compare energy produced to energy consumed from external sources, exceed 1000:1 for fields that are largely self-sufficient. The lowest energy returns are found to come from thermally-enhanced oil recovery technologies. Results are generally insensitive to reasonable ranges of assumptions explored in sensitivity analysis. Fields with very large associated gas production are sensitive to assumptions about surface fluids processing due to the shifts in energy consumed under different gas treatment configurations. This model does not currently include energy invested in building oilfield capital equipment (e.g., drilling rigs), nor does it include other indirect energy uses such as labor or services.     

免疫细胞浸润在非小细胞肺癌诊断与预后中的应用

免疫细胞浸润对癌症的诊断与预后有着重要意义。文中收集TCGA数据库已收录的非小细胞肺癌肿瘤与正常组织基因表达数据,利用CIBERSORT工具得到22种免疫细胞占比来评估免疫细胞浸润情况。以22种免疫细胞占比为特征,用机器学习方法构建了非小细胞肺癌肿瘤与正常组织的分类模型,其中随机森林方法构建的模型分类效果AUC=0.987、敏感性0.98及特异性0.84。并且用随机森林方法构建的肺腺癌和肺鳞癌肿瘤组织分类模型效果AUC=0.827、敏感性0.75及特异性0.77。用LASSO回归筛选22种免疫细胞特征,保留8种强相关特征组成的免疫细胞评分结合临床特征构建了非小细胞肺癌预后模型。经评估及验证,预后模型C-index=0.71并且3年和5年的校准曲线拟合良好,可以对预后风险度进行准确预测。本研究基于免疫细胞浸润所构建的分类模型与预后模型,旨在对非小细胞肺癌的诊断与预后研究提供新的策略。