Detecting non-neutral heterogeneity across a region of DNA sequence in the ratio of polymorphism to divergence

Natural selection, in the form of balancing selection or selective sweeps, can result in a decoupling of the amounts of molecular polymorphism and divergence. Thus natural selection can cause some areas of DNA sequence to have greater silent polymorphism, relative to divergence between species, than other areas. It would be useful to have a statistical test for heterogeneity in the polymorphism to divergence ratio across a region of DNA sequence, one that could identify heterogeneity greater than that expected from the neutral processes of mutation, drift, and recombination. The only currently available test requires that a region be arbitrarily divided into sections that are compared with each other, and the subjectivity of this division could be problematic. Here a test is proposed in which runs of polymorphic and fixed sites are counted, where a "run" is a set of one or more sites of one type preceded and followed by the other type. The number of runs is smaller than otherwise expected if polymorphisms are clumped together. By simulating neutral evolution and comparing the observed number of runs to the simulations, a statistical test is possible which does not require any a priori decisions about subdivision.      

Effects of ethanol,octanoic and decanoic acids on fermentation and the passive influx of protons through the plasma membrane of Saccharomyces cerevisiae

Ethanol, octanoic and decanoic acids are known toxic products of alcoholic fermentation and inhibit yeast functions such as growth and fermentation. pH-stat measurements showed that, in a concentration range up to 20 mg/l, octanoic and decanoic acids increase the rate of passive H⁺ influx across the plasma membrane of Saccharomyces cerevisiae IGC 3507. Decanoic acid was more active than octanoic acid, which agrees with its higher liposolubility. The fatty acids probably act as H⁺ carriers, since the magnitude of the effect depended on pH and correlated with the concentration of protonated fatty acids. Esterification of the fatty acids partially abolished the enhancing effect on passive H⁺ influx. Passive H⁺ influx showed saturation kinetics with half-maximal activity at 6.6 M H⁺ (pH 5.2). Contrary to previous findings, ethanol inhibited H⁺ influx exponentially up to a concentration of 8% (v/v). At higher concentrations, ethanol reactivated H⁺ influx; the original rate of H⁺ uptake was reached at 14% (v/v) ethanol. In the same concentration ranges that affected passive H⁺ influx, ethanol, octanoic and decanoic acids inhibited the fermentation rate. This inhibitory effect of the fatty acids on fermentation rate depended on liposolubility, pH, and esterification in the same way as that found for their effect on passive H⁺ influx. Inhibition of fermentation by octanoic and decanoic acids could therefore result from their effect on the rate of passive H⁺ influx. Correspondence to: S. Stevens     

The Influence of Antimicrobial Peptides and Mucolytics on the Integrity of Biofilms Consisting of Bacteria and Yeasts as Affecting Voice Prosthetic Air Flow Resistances

The integrity of biofilms on voice prostheses used to rehabilitate speech in laryngectomized patients causes unwanted increases in airflow resistance, impeding speech. Biofilm integrity is ensured by extracellular polymeric substances (EPS). This study aimed to determine whether synthetic salivary peptides or mucolytics, including N-acetylcysteine and ascorbic acid, influence the integrity of voice prosthetic biofilms. Biofilms were grown on voice prostheses in an artificial throat model and exposed to synthetic salivary peptides, mucolytics and two different antiseptics (chlorhexidine and Triclosan). Synthetic salivary peptides did not reduce the air flow resistance of voice prostheses after biofilm formation. Although both chlorhexidine and Triclosan reduced microbial numbers on the prostheses, only the Triclosan-containing positive control reduced the air flow resistance. Unlike ascorbic acid, the mucolytic N-acetylcysteine removed most EPS from the biofilms and induced a decrease in air flow resistance.     

THE NEST OF THE KNYSNA SCRUB WARBLER (BRADYPTERUS SYLVATICUS) AND SOME NOTES ON PARENTAL BEHAVIOUR

Von Maltitz, F., Schmitt, M. B., &; Biggs, H. C. 1984. Measurements, moult and abundance of the Lizard Buzzard in the Transvaal. Ostrich 55: 177–181.

During a 12-year study 51 Lizard Buzzards Kaupifalco monogrammicus were captured in the Transvaal. South Africa. They occurred sporadically, with peaks in the years 1972, 1975, 1979 and 1983 and were significantly more common in winter. Moult was completed between January and June. Mass is given and recaptures documented.     

Variation in cranial morphology of bottlenose dolphins (genus Tursiops) off South Africa

Taxonomy plays an important role in conservation biology. Despite the variety of methods used to differentiate units, some groups, such as Delphinidae within the Cetacea have proven difficult to untangle. This study aimed to shed light on morphological variation of the genus Tursiops in South African waters using geometric morphometrics and to distinguish morphological groups and variation in these groups. A total of 241 crania of Tursiops spp. were analyzed using a suite of 2‐dimensional landmarks defined on photographs of the specimens. Results revealed two distinct morphological groups, with the smaller cluster comprised mainly of specimens from the cold temperate region off the west coast and the larger cluster comprised of specimens mainly from the warm temperate and subtropical regions off the south and east coast, respectively. We suggest that these groups correspond to different species of Tursiops, but this result requires further support. These groups were treated as separate entities and sexual dimorphism and geographic variation were assessed within each group. While sexual dimorphism and geographic variation were not significant within Cluster D1 and V1, they were significant within Clusters D2 and V2. The few Cluster 1 specimens found in the warm temperate and subtropical regions, relative to the number of Cluster 2 specimens, could be an indication of an offshore distribution for this group in these regions. Alternatively, the smaller cluster may also be indicative of a potentially small population size.