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Borys Chong-Pérez Maritza Reyes Luis Rojas Bárbara Ocaña Adolfo Ramos Rafael G. Kosky Geert Angenon 《Plant molecular biology》2013,83(1-2):143-152
Antibiotic and herbicide resistance genes have been used in transgene technology as powerful selection tools. Nonetheless, once transgenic events have been obtained their presence is no longer needed and can even be undesirable. In this work, we have developed a system to excise the selectable marker and the cre recombinase genes from transgenic banana cv. ‘Grande Naine’ (Musa AAA). To achieve this, the embryo specific REG-2 promoter was isolated from rice and its expression pattern in banana cell clumps, somatic embryos and regenerated plantlets was characterized by using a pREG2::uidA fusion construct. Subsequently, the REG-2 promoter was placed upstream of the cre gene, conferring Cre functionality in somatic embryos and recombination of lox sites resulting in excision of the selectable marker and cre genes. PCR analysis revealed that 41.7 % of the analysed transgenic plants were completely marker free, results that were thereafter confirmed by Southern blot hybridization. These results demonstrate the feasibility of using developmentally controlled promoters to mediate marker excision in banana. This system does not require any extra handling compared to the conventional transformation procedure and might be useful in other species regenerating through somatic embryogenesis. 相似文献
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Myrsini Sakarika Janne Spanoghe Yixing Sui Eva Wambacq Oliver Grunert Geert Haesaert Marc Spiller Siegfried E. Vlaeminck 《Microbial biotechnology》2020,13(5):1336-1365
Purple non-sulphur bacteria (PNSB) are phototrophic microorganisms, which increasingly gain attention in plant production due to their ability to produce and accumulate high-value compounds that are beneficial for plant growth. Remarkable features of PNSB include the accumulation of polyphosphate, the production of pigments and vitamins and the production of plant growth-promoting substances (PGPSs). Scattered case studies on the application of PNSB for plant cultivation have been reported for decades, yet a comprehensive overview is lacking. This review highlights the potential of using PNSB in plant production, with emphasis on three key performance indicators (KPIs): fertilization, resistance to stress (biotic and abiotic) and environmental benefits. PNSB have the potential to enhance plant growth performance, increase the yield and quality of edible plant biomass, boost the resistance to environmental stresses, bioremediate heavy metals and mitigate greenhouse gas emissions. Here, the mechanisms responsible for these attributes are discussed. A distinction is made between the use of living and dead PNSB cells, where critical interpretation of existing literature revealed the better performance of living cells. Finally, this review presents research gaps that remain yet to be elucidated and proposes a roadmap for future research and implementation paving the way for a more sustainable crop production. 相似文献
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Jinze Noordijk C. J. M. Musters Jerry van Dijk Geert R. de Snoo 《Biodiversity and Conservation》2010,19(11):3255-3268
Sown, temporary field margins are a common agri-environment scheme (AES) in the Netherlands. Despite their wide application,
though, there has been scarcely any long-term monitoring of the succession of invertebrates. In the field margins of 40 farms,
invertebrate diversity and the abundance of three functional groups were assessed in relation to age. The diversity in terms
of number of species groups was found to increase with the age of the margins. The abundance of herbivores and detritivores
also showed a positive correlation with the age of the margins. However, the abundance of predators decreased with increasing
age. Older margins showed a higher total vegetation cover and fewer plant species, also resulting in lower plant species evenness.
We suggest several changes to the current AES regulations. For the conservation of invertebrate diversity, longer-lasting
field margins are desirable. In addition, old margins are favoured by detritivores, a group that has particular difficulty
finding suitable habitats in agricultural landscapes. However, such margins are less favourable from an agricultural perspective,
as they appear unsuitable for high abundances of potentially useful predators and the high vegetation cover attracts many
potentially harmful herbivores. To circumvent this, the AES might be extended by incorporating hay-making, which would reduce
standing biomass and might lead to more predators and fewer herbivores. 相似文献
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Samantha L. van der Beek Azul Zorzoli Ebru anak Robert N. Chapman Kieron Lucas Benjamin H. Meyer Dimitrios Evangelopoulos Luiz Pedro S. de Carvalho Geert‐Jan Boons Helge C. Dorfmueller Nina M. van Sorge 《Molecular microbiology》2019,111(4):951-964
Biosynthesis of the nucleotide sugar precursor dTDP‐L‐rhamnose is critical for the viability and virulence of many human pathogenic bacteria, including Streptococcus pyogenes (Group A Streptococcus; GAS), Streptococcus mutans and Mycobacterium tuberculosis. Streptococcal pathogens require dTDP‐L‐rhamnose for the production of structurally similar rhamnose polysaccharides in their cell wall. Via heterologous expression in S. mutans, we confirmed that GAS RmlB and RmlC are critical for dTDP‐L‐rhamnose biosynthesis through their action as dTDP‐glucose‐4,6‐dehydratase and dTDP‐4‐keto‐6‐deoxyglucose‐3,5‐epimerase enzymes respectively. Complementation with GAS RmlB and RmlC containing specific point mutations corroborated the conservation of previous identified catalytic residues. Bio‐layer interferometry was used to identify and confirm inhibitory lead compounds that bind to GAS dTDP‐rhamnose biosynthesis enzymes RmlB, RmlC and GacA. One of the identified compounds, Ri03, inhibited growth of GAS, other rhamnose‐dependent streptococcal pathogens as well as M. tuberculosis with an IC50 of 120–410 µM. Importantly, we confirmed that Ri03 inhibited dTDP‐L‐rhamnose formation in a concentration‐dependent manner through a biochemical assay with recombinant rhamnose biosynthesis enzymes. We therefore conclude that inhibitors of dTDP‐L‐rhamnose biosynthesis, such as Ri03, affect streptococcal and mycobacterial viability and can serve as lead compounds for the development of a new class of antibiotics that targets dTDP‐rhamnose biosynthesis in pathogenic bacteria. 相似文献
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Hanne L. P. Tytgat Geert Schoofs Michèle Driesen Paul Proost Els J. M. Van Damme Jos Vanderleyden Sarah Lebeer 《Microbial biotechnology》2015,8(1):164-168
Biotinylation is widely used in DNA, RNA and protein probing assays as this molecule has generally no impact on the biological activity of its substrate. During the streptavidin‐based detection of glycoproteins in Lactobacillus rhamnosus GG with biotinylated lectin probes, a strong positive band of approximately 125 kDa was observed, present in different cellular fractions. This potential glycoprotein reacted heavily with concanavalin A (ConA), a lectin that specifically binds glucose and mannose residues. Surprisingly, this protein of 125 kDa could not be purified using a ConA affinity column. Edman degradation of the protein, isolated via cation and anion exchange chromatography, lead to the identification of the band as pyruvate carboxylase, an enzyme of 125 kDa that binds biotin as a cofactor. Detection using only the streptavidin conjugate resulted in more false positive signals of proteins, also in extracellular fractions, indicating biotin‐associated proteins. Indeed, biotin is a known cofactor of numerous carboxylases. The potential occurence of false positive bands with biotinylated protein probes should thus be considered when using streptavidin‐based detection, e.g. by developing a blot using only the streptavidin conjugate. To circumvent these false positives, alternative approaches like detection based on digoxigenin labelling can also be used. 相似文献
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Laura D. Bertola Laura Tensen Pim van Hooft Paula A. White Carlos A. Driscoll Philipp Henschel Anthony Caragiulo Isabela Dias-Freedman Etotépé A. Sogbohossou Pricelia N. Tumenta Tuqa H. Jirmo Geert R. de Snoo Hans H. de Iongh Klaas Vrieling 《PloS one》2015,10(10)
The evolutionary history of a species is key for understanding the taxonomy and for the design of effective management strategies for species conservation. The knowledge about the phylogenetic position of the lion (Panthera leo) in West/Central Africa is largely based on mitochondrial markers. Previous studies using mtDNA only have shown this region to hold a distinct evolutionary lineage. In addition, anthropogenic factors have led to a strong decline in West/Central African lion numbers, thus, the conservation value of these populations is particularly high. Here, we investigate whether autosomal markers are concordant with previously described phylogeographic patterns, and confirm the unique position of the West/Central African lion. Analysis of 20 microsatellites and 1,454 bp of the mitochondrial DNA in 16 lion populations representing the entire geographic range of the species found congruence in both types of markers, identifying four clusters: 1) West/Central Africa, 2) East Africa, 3) Southern Africa and 4) India. This is not in line with the current taxonomy, as defined by the IUCN, which only recognizes an African and an Asiatic subspecies. There are no indications that genetic diversity in West/Central Africa lions is lower than in either East or Southern Africa, however, given this genetic distinction and the recent declines of lion numbers in this region, we strongly recommend prioritization of conservation projects in West/Central Africa. As the current taxonomic nomenclature does not reflect the evolutionary history of the lion, we suggest that a taxonomic revision of the lion is warranted. 相似文献