Intraspecific genome size variation and morphological differentiation of Ranunculus parnassifolius (Ranunculaceae), an Alpine–Pyrenean–Cantabrian polyploid group

The aim of this study was to assess genome size variation and multivariate morphometric analyses to ascertain cytotype distribution patterns and the morphological differentiation within the Ranunculus parnassifolius group in the Pyrenees and the Alps. Although divergences in nuclear DNA content among different species within a genus are widely acknowledged, intraspecific variation is still a somewhat controversial issue. Holoploid and monoploid genome sizes (C‐ and Cx‐values) were determined using propidium iodide flow cytometry in 125 plants of R. parnassifolius s.l. distributed across four European countries. Three different DNA ploidy levels were revealed in the study area: diploid (2n ～ 2x, 57.14%), triploid (2n ～ 3x, 1.19%), and tetraploid (2n ～ 4x, 41.67%). The mean population 2C‐values ranged from 8.15 pg in diploids to 14.80 pg in tetraploids, representing a ratio of 1 : 1.8. Marked intraspecific/interpopulation differences in nuclear DNA content were found. Diploid populations prevail in the Pyrenees, although tetraploid cytotypes were reported throughout the distribution area. In general, mixed‐cytotype populations were not found. The Spearman correlation coefficient did not reveal significant correlations between genome size and altitude, longitude, or latitude. Morphometric analyses and cluster analyses based on genome size variation revealed the presence of three major groups, which exhibited a particular biogeographical pattern. A new cytotype, DNA triploid, was found for the first time. Tetraploid populations showed constant nuclear DNA levels, whereas diploid populations from the Pyrenees, in which introgressive hybridization is suggested as a presumable trigger for genome size variation, did not. Scenarios for the evolution of geographical parthenogenesis in R. parnassifolius s.l. are discussed. Finally, the different levels of effectiveness between plant and animal reference standards are analysed. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 101 , 251–271.     

Use of Camera-Trapping to Estimate Puma Density and Influencing Factors in Central Brazil

Abstract: We used remotely triggered cameras to collect data on Puma (Puma concolor) abundance and occupancy in an area of tropical forest in Brazil where the species' status is poorly known. To evaluate factors influencing puma occupancy we used data from 5 sampling campaigns in 3 consecutive years (2005 to 2007) and 2 seasons (wet and dry), at a state park and a private forest reserve. We estimated puma numbers and density for the 2007 sampling data by developing a standardized individual identification method. We based individual identification on 1) time-stable parameters (SP; physical features that do not change over time), and 2) time-variable parameters (VP; marks that could change over time such as scars and botfly marks). Following individual identification we established a capture-recapture history and analyzed it using closed population capture-mark-recapture models. Puma capture probability was influenced by camera placement (roads vs. trails), sampling year, and prey richness. Puma occupancy was positively associated with species richness and there was a correlation between relative puma and jaguar (Panthera onca) abundance. Identifications enabled us to generate 8 VP histories for each photographed flank, corresponding to 8 individuals. We estimated the sampled population at 9 pumas (SE = 1.03, 95% CI = 8–10 individuals) translating to a density of 3.40 pumas/100 km². Information collected using camera-traps can effectively be used to assess puma population size in tropical forests. As habitat progressively disappears and South American felines become more vulnerable, our results support the critical importance of private forest reserves for conservation.     

Sett density as an estimator of population density in the European badger Meles meles

• 1 Estimations of European badger population density in the UK are usually based on surveys of numbers of main setts. However, this approach cannot be used in low‐density areas, such as the Mediterranean region, where no main setts can be defined. Therefore, an alternative method is needed to estimate badger density over large areas.
• 2 We reviewed the existing published information to evaluate whether badger density is correlated to the density of all setts in an area (not only the main setts) and to ask whether badger density can be predicted from total sett number throughout the geographical range of the species.
• 3 In multiple regression analysis, badger density and the size of the study area explained 73% of the variance in sett density. Badger density had a significant positive effect on sett density, while the effect of study area size was not significant. Therefore, total sett density can be used to obtain an estimation of relative badger density in all habitats and regions throughout the badger's geographical range, allowing comparative research.

     

Changes in the Molecular Weight Distribution of the Hemicellulosic Polysaccharides from Rice Coleoptiles Growing Under Different Conditions

The changes in the molecular weight distribution of water-solubleand water-insoluble hemicelluloses from the cell walls of ricecoleoptiles growing in air and under water were studied. Thegrowth of rice coleoptiles was remarkably enhanced by growingunder water. Water-insoluble hemicellulose, mainly constitutedby xyloglucan, suffered an important depolymerization duringcoleoptile growth. On the other hand, ß-glucan andarabinoxylan, the two main polysaccharides of the water-solublehemicelluloses showed different changes during coleoptile growth.ß-glucan showed an increase in its degree of polymerizationduring the coleoptile fast growth phase and it decreased beforecoleoptile growth ceased. Arabinoxylan did not show importantdifferences in its mass-average molecular weight. Thus, xyloglucanand ß-glucan are the two hemicellulosic polysaccharidesinvolved in the cell wall loosening mechanism during coleoptilegrowth under both culture conditions. Key words: Arabinoxylan, cell wall, ß-glucan, xyloglucan     

Nuclear DNA Content in Twelve Species of Alstroemeria L. and Some of their Hybrids

Nuclear DNA content (2C-value), estimated through flow cytometryusing propidium iodide (PI), was shown to vary from 36.5 pgto 78.9 pg among 29 accessions of 12Alstroemeria species (2n=2x =16). The extremes were found inA. magnifica ssp.magnificaand inA. ligtu ssp.simsii , both belonging to the Chilean speciesgroup. The four Brazilian species exhibited less variation innuclear DNA content (49.8–56.4 pg), than the eight Chileanspecies (36.5–78.9 pg). Nuclear DNA content was positivelycorrelated (r =0.92,n =7,P <0.01) with the total chromosomelength. It was also positively correlated (r =0.85,n =5,P <0.01)with the length of C-bands, when only the Chilean species wereconsidered. When both karyotype parameters, length of non-C-bandedchromosome regions (x) and length of C-bands (y) were determined,it was possible to predict the nuclear DNA content (z) withthe formula z=0.65x +1.31y-0.45 (R ²=0.97,P =0.004). The DAPI fluorescence of most accessions was proportional tothe PI fluorescence (r =0.98,P <0.001), except for one accessionofA. ligtu , that had a relatively high PI/DAPI ratio (1.88).The PI/DAPI ratios of the Brazilian species were lower (1.59–1.67)than those of the Chilean species (1.68–1.88), which mightreflect a difference in base pair composition. Four groups ofspecies could be distinguished on the basis of fluorescencevalues. Diploid interspecific hybrids were shown to have a DNAcontent intermediate to the values of the parents involved.Both the PI and the DAPI fluorescence values of these hybridsapproximated the mid parent values. Tetraploids, derived fromselfing of diploids, had PI and DAPI fluorescence values thatwere twice that of the diploid hybrids. It was possible to distinguishaneuploids from euploids based on fluorescence values. Alstroemeria ; aneuploidy; C-banding; DAPI; evolution; flow cytometry; genome size; geophytes; karyotypes; Inca Lily; nuclear DNA; propidium iodide     

Subfossil Cladocera in relation to contemporary environmental variables in 54 Pan-European lakes

1. Changes in cladoceran subfossils in the surface sediments of 54 shallow lakes were studied along a European latitude gradient (36–68°N). Multivariate methods, such as regression trees and ordination, were applied to explore the relationships between cladoceran taxa distribution and contemporary environmental variables, with special focus on the impact of climate. 2. Multivariate regression tree analysis showed distinct differences in cladoceran community structure and lake characteristics along the latitude gradient, identifying three groups: (i) northern lakes characterised by low annual mean temperature, conductivity, nutrient concentrations and fish abundance, (ii) southern, macrophyte rich, warm water lakes with high conductivity and high fish abundance and (iii) Mid‐European lakes at intermediate latitudes with intermediate conductivities, trophic state and temperatures. 3. Large‐sized, pelagic species dominated a group of seven northern lakes with low conductivity, where acid‐tolerant species were also occasionally abundant. Small‐sized, benthic‐associated species dominated a group of five warm water lakes with high conductivity. Cladoceran communities generally showed low species‐specific preferences for habitat and environmental conditions in the Mid‐European group of lakes. Taxon richness was low in the southern‐most, high‐conductivity lakes as well as in the two northern‐most sub‐arctic lakes. 4. The proportion of cladoceran resting eggs relative to body shields was high in the northern lakes, and linearly (negatively) related to both temperature and Chl a, indicating that both cold climate (short growing season) and low food availability induce high ephippia production. 5. Latitude and, implicitly, temperature were strongly correlated with conductivity and nutrient concentrations, highlighting the difficulties of disentangling a direct climate signal from indirect effects of climate, such as changes in fish community structure and human‐related impacts, when a latitude gradient is used as a climate proxy. Future studies should focus on the interrelationships between latitude and gradients in nutrient concentration and conductivity.