Mutual Information Rate and Bounds for It

The amount of information exchanged per unit of time between two nodes in a dynamical network or between two data sets is a powerful concept for analysing complex systems. This quantity, known as the mutual information rate (MIR), is calculated from the mutual information, which is rigorously defined only for random systems. Moreover, the definition of mutual information is based on probabilities of significant events. This work offers a simple alternative way to calculate the MIR in dynamical (deterministic) networks or between two time series (not fully deterministic), and to calculate its upper and lower bounds without having to calculate probabilities, but rather in terms of well known and well defined quantities in dynamical systems. As possible applications of our bounds, we study the relationship between synchronisation and the exchange of information in a system of two coupled maps and in experimental networks of coupled oscillators.     

Bicentenariella n. g. (Monogenea: Dactylogyridae) including descriptions of three new species and two new combinations from serranid fishes (Actinopterygii: Serranidae: Anthiinae) in the South American Pacific Ocean

Systematic Parasitology - Bicentenariella n. g. is proposed to accommodate three new species of dactylogyrid monogeneans found on the gills of the threadfin bass Pronotogrammus multifasciatus Gill...     

Kinetics of vanadate dissociation: estimation of the rate by inhibitor inactivation

Vanadate (+5) is a potent inhibitor of a variety of ATPases including dynein ATPase. We describe a method useful for estimating the functional dissociation rate of vanadate from the active site which does not rely on classical physical separation techniques. The method involves spectrophotometrically monitoring the enzymatic activity as the inhibitor dissociates from the enzyme and is inactivated by norepinephrine. Norepinephrine effectively reverses vanadate inhibition by reducing vanadate (+5) to oxovanadium (+4). This reduction by norepinephrine is sufficiently fast for these purposes--addition of vanadate after norepinephrine shows no inhibition of ATPase activity. The mathematical estimation procedure is generally useful for estimation of dissociation rates of other reversible inhibitors which can be quickly inactivated after dissociation from the enzyme. The rate of dissociation of vanadate from dynein with ATP and 2-N3ATP as substrates using this method was estimated to be in the ranges 0.0023-0.0042 and 0.0057-0.0075 s-1, respectively. These rates permit estimation of the rates of vanadate association with dynein by using the reported dissociation constant for vanadate. The results are consistent with the very fast and potent inhibition of dynein ATPase activity observed.     

Developmentally Arrested Precursors of Pontine Neurons Establish an Embryonic Blueprint of the Drosophila Central Complex

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Characterization of the molecular properties of KtrC,a second RCK domain that regulates a Ktr channel in Bacillus subtilis

RCK (regulating conductance of K⁺) domains are common regulatory domains that control the activity of eukaryotic and prokaryotic K⁺ channels and transporters. In bacteria these domains play roles in osmoregulation, regulation of turgor and membrane potential and in pH homeostasis. Whole-genome sequencing unveiled RCK gene redundancy, however the biological role of this redundancy is not well understood. In Bacillus subtilis, there are two closely related RCK domain proteins (KtrA and KtrC) that regulate the activity of the Ktr cation channels. KtrA has been well characterized but little is known about KtrC. We have characterized the structural and biochemical proprieties of KtrC and conclude that KtrC binds ATP and ADP, just like KtrA. However, in solution KtrC exist in a dynamic equilibrium between octamers and non-octameric species that is dependent on the bound ligand, with ATP destabilizing the octameric ring relative to ADP. Accordingly, KtrC-ADP crystal structures reveal closed octameric rings similar to those in KtrA, while KtrC-ATP adopts an open assembly with RCK domains forming a super-helix. In addition, both KtrC-ATP and -ADP octamers are stabilized by the signaling molecule cyclic-di-AMP, which binds to KtrC with high affinity. In contrast, c-di-AMP binds with 100-fold lower affinity to KtrA. Despite these differences we show with an E. coli complementation assay that KtrC and KtrA are interchangeable and able to form functional transporters with both KtrB and KtrD. The distinctive properties of KtrC, in particular ligand-dependent assembly/disassembly, suggest that this protein has a specific physiological role that is distinct from KtrA.     

Six new species of Rhamnocercus Monaco,Wood & Mizelle, 1954 (Monogenea: Diplectanidae) infecting the gills from South American sciaenid fishes

A parasitological survey searching diplectanids (Monogenea: Diplecatnidae) infesting the gills of marine fishes from South America was carried out during the 2019–2020 period. The gills of four sciaenid species, 2 Cheilotrema fasciatum Tschudi, 1 smalleye croaker Nebris microps Cuvier, 2 royal highhat Pareques lanfeari (Barton), and 1 minor stardrum Stellifer minor (Tschudi), were sampled. Six new species of Rhamnocercus Monaco, Wood & Mizelle, 1954 were described: Rhamnocercus chacllae n. sp. and Rhamnocercus chaskae n. sp. from P. lanfeari, Rhamnocercus fasciatus n. sp. from C. fasciatum, Rhamnocercus microps n. sp. from N. microps, and Rhamnocercus rimaci n. sp. and Rhamnocercus tantaleani n. sp. from S. minor. Rhamnocercus chacllae n. sp. can be differentiated from its congeners by its L-shaped male copulatory organ (MCO) and by having an anteromedial slight notch at ventral bar. Rhamnocercus chaskae n. sp. differs from the other species of the genus by its long and straight MCO with bifid distal end and by having haptoral accessory spines at level of ventral bar with quadrifid distal portion. Rhamnocercus fasciatus n. sp. is characterized by possessing a straight and long MCO with truncated distal end, haptoral accessory spines at level of ventral bar with bifid distal portion, dorsal bars with a knob at lateral extremity, and a large vagina with bell-shaped. Rhamnocercus microps n. sp. differs from all congeners mainly by having a short and straight MCO with the distal end of internal tube spatulate and uncovered by external tube. Rhamnocercus rimaci n. sp. is can be distinguished from all other species of Rhamnocercus by having an almost J-shaped MCO with the distal end of external tube slight expanded and the distal end of internal tube narrow and uncovered by external tube. Rhamnocercus tantaleani n. sp. is mainly characterized by its MCO, which is tubular and straight, having the distal end of external tube bifurcated (right branch well-expanded and left branch narrow) and the distal end of internal tube enveloped by left branch of the external tube. This is the first data on the parasites of P. lanfeari, a little known, but popular fish in local markets from Peru. Rhamnocercus microps n. sp. is the first described species of Rhamnocercus in Brazil. The present finding brings to 12, the number of known species of Rhamnocercus. A key to Rhamnocercus species is provided.

     

Detailed Characterization of Brain Dysfunction in a Long-Term Rodent Model of Critical Illness

Neurochemical Research - Critical illness encompasses a wide spectrum of life-threatening clinical conditions requiring intensive care. Our objective was to evaluate cognitive, inflammatory and...