Mutual Information Rate and Bounds for It

The amount of information exchanged per unit of time between two nodes in a dynamical network or between two data sets is a powerful concept for analysing complex systems. This quantity, known as the mutual information rate (MIR), is calculated from the mutual information, which is rigorously defined only for random systems. Moreover, the definition of mutual information is based on probabilities of significant events. This work offers a simple alternative way to calculate the MIR in dynamical (deterministic) networks or between two time series (not fully deterministic), and to calculate its upper and lower bounds without having to calculate probabilities, but rather in terms of well known and well defined quantities in dynamical systems. As possible applications of our bounds, we study the relationship between synchronisation and the exchange of information in a system of two coupled maps and in experimental networks of coupled oscillators.     

Bicentenariella n. g. (Monogenea: Dactylogyridae) including descriptions of three new species and two new combinations from serranid fishes (Actinopterygii: Serranidae: Anthiinae) in the South American Pacific Ocean

Systematic Parasitology - Bicentenariella n. g. is proposed to accommodate three new species of dactylogyrid monogeneans found on the gills of the threadfin bass Pronotogrammus multifasciatus Gill...     

Characterization of the molecular properties of KtrC,a second RCK domain that regulates a Ktr channel in Bacillus subtilis

RCK (regulating conductance of K⁺) domains are common regulatory domains that control the activity of eukaryotic and prokaryotic K⁺ channels and transporters. In bacteria these domains play roles in osmoregulation, regulation of turgor and membrane potential and in pH homeostasis. Whole-genome sequencing unveiled RCK gene redundancy, however the biological role of this redundancy is not well understood. In Bacillus subtilis, there are two closely related RCK domain proteins (KtrA and KtrC) that regulate the activity of the Ktr cation channels. KtrA has been well characterized but little is known about KtrC. We have characterized the structural and biochemical proprieties of KtrC and conclude that KtrC binds ATP and ADP, just like KtrA. However, in solution KtrC exist in a dynamic equilibrium between octamers and non-octameric species that is dependent on the bound ligand, with ATP destabilizing the octameric ring relative to ADP. Accordingly, KtrC-ADP crystal structures reveal closed octameric rings similar to those in KtrA, while KtrC-ATP adopts an open assembly with RCK domains forming a super-helix. In addition, both KtrC-ATP and -ADP octamers are stabilized by the signaling molecule cyclic-di-AMP, which binds to KtrC with high affinity. In contrast, c-di-AMP binds with 100-fold lower affinity to KtrA. Despite these differences we show with an E. coli complementation assay that KtrC and KtrA are interchangeable and able to form functional transporters with both KtrB and KtrD. The distinctive properties of KtrC, in particular ligand-dependent assembly/disassembly, suggest that this protein has a specific physiological role that is distinct from KtrA.     

Six new species of Rhamnocercus Monaco,Wood & Mizelle, 1954 (Monogenea: Diplectanidae) infecting the gills from South American sciaenid fishes

A parasitological survey searching diplectanids (Monogenea: Diplecatnidae) infesting the gills of marine fishes from South America was carried out during the 2019–2020 period. The gills of four sciaenid species, 2 Cheilotrema fasciatum Tschudi, 1 smalleye croaker Nebris microps Cuvier, 2 royal highhat Pareques lanfeari (Barton), and 1 minor stardrum Stellifer minor (Tschudi), were sampled. Six new species of Rhamnocercus Monaco, Wood & Mizelle, 1954 were described: Rhamnocercus chacllae n. sp. and Rhamnocercus chaskae n. sp. from P. lanfeari, Rhamnocercus fasciatus n. sp. from C. fasciatum, Rhamnocercus microps n. sp. from N. microps, and Rhamnocercus rimaci n. sp. and Rhamnocercus tantaleani n. sp. from S. minor. Rhamnocercus chacllae n. sp. can be differentiated from its congeners by its L-shaped male copulatory organ (MCO) and by having an anteromedial slight notch at ventral bar. Rhamnocercus chaskae n. sp. differs from the other species of the genus by its long and straight MCO with bifid distal end and by having haptoral accessory spines at level of ventral bar with quadrifid distal portion. Rhamnocercus fasciatus n. sp. is characterized by possessing a straight and long MCO with truncated distal end, haptoral accessory spines at level of ventral bar with bifid distal portion, dorsal bars with a knob at lateral extremity, and a large vagina with bell-shaped. Rhamnocercus microps n. sp. differs from all congeners mainly by having a short and straight MCO with the distal end of internal tube spatulate and uncovered by external tube. Rhamnocercus rimaci n. sp. is can be distinguished from all other species of Rhamnocercus by having an almost J-shaped MCO with the distal end of external tube slight expanded and the distal end of internal tube narrow and uncovered by external tube. Rhamnocercus tantaleani n. sp. is mainly characterized by its MCO, which is tubular and straight, having the distal end of external tube bifurcated (right branch well-expanded and left branch narrow) and the distal end of internal tube enveloped by left branch of the external tube. This is the first data on the parasites of P. lanfeari, a little known, but popular fish in local markets from Peru. Rhamnocercus microps n. sp. is the first described species of Rhamnocercus in Brazil. The present finding brings to 12, the number of known species of Rhamnocercus. A key to Rhamnocercus species is provided.

     

Detailed Characterization of Brain Dysfunction in a Long-Term Rodent Model of Critical Illness

Neurochemical Research - Critical illness encompasses a wide spectrum of life-threatening clinical conditions requiring intensive care. Our objective was to evaluate cognitive, inflammatory and...     

Carotid Intima-Media Thickness at Age 30, Birth Weight,Accelerated Growth during Infancy and Breastfeeding: A Birth Cohort Study in Southern Brazil

Objective

To examine the relationship between carotid intima-media thickness (IMT) at age 30 and birth characteristics, growth during infancy, and breastfeeding duration, among subjects who have been prospectively followed since birth.

Methods and Results

In 1982, all births in the city of Pelotas, southern Brazil, were identified and those children (n = 5,914) whose families lived in the urban area of the city have been followed and evaluated at several time points. The cohort participants were evaluated in 2012–13, and IMT was measured at the posterior wall of the right and left common carotid arteries in longitudinal planes using ultrasound imaging. We obtained valid IMT measurements for 3,188 individuals. Weight-for-age z-score (WAZ) at age 2 years, weight-for-height z-score (WHZ) at age 4, height-for-age z-score (HAZ) at 4 years, WAZ at age 4 and relative conditional weight at 4 years were positively associated with IMT, even after controlling for confounding variables. The beta-coefficient associated with ≥1 s.d. WAZ at age 2 (compared to those with a <–1 s.d.) was 3.62 μm (95% CI 0.86 to 6.38). The beta-coefficient associated with ≥1 s.d. WHZ at 4 (in relation to <–1 s.d) was 3.83 μm (95% CI 0.24 to 7.42). For HAZ at 4, the beta-coefficient for ≥1 s.d. in relation to <–1 s.d. was 4.19 μm (95% CI 1.14 to 7.25). For WAZ at 4, the beta-coefficient associated with ≥1 s.d. in relation to <–1 s.d. was 4.28 μm (95% CI 1.59 to 6.97). The beta-coefficient associated with conditional weight gain at age 2–4 was 1.26 μm (95% CI 0.49 to 2.02).

Conclusion

IMT at age 30 was positively associated with WAZ at age 2 years, WHZ at age 4, HAZ at age 4, WAZ at age 4 and conditional weight gain at age 4 years.     

Leptospirosis in Rio Grande do Sul,Brazil: An Ecosystem Approach in the Animal-Human Interface

Background

Leptospirosis is an epidemic-prone neglected disease that affects humans and animals, mostly in vulnerable populations. The One Health approach is a recommended strategy to identify drivers of the disease and plan for its prevention and control. In that context, the aim of this study was to analyze the distribution of human cases of leptospirosis in the State of Rio Grande do Sul, Brazil, and to explore possible drivers. Additionally, it sought to provide further evidence to support interventions and to identify hypotheses for new research at the human-animal-ecosystem interface.

Methodology and findings

The risk for human infection was described in relation to environmental, socioeconomic, and livestock variables. This ecological study used aggregated data by municipality (all 496). Data were extracted from secondary, publicly available sources. Thematic maps were constructed and univariate analysis performed for all variables. Negative binomial regression was used for multivariable statistical analysis of leptospirosis cases. An annual average of 428 human cases of leptospirosis was reported in the state from 2008 to 2012. The cumulative incidence in rural populations was eight times higher than in urban populations. Variables significantly associated with leptospirosis cases in the final model were: Parana/Paraiba ecoregion (RR: 2.25; CI_95%: 2.03–2.49); Neossolo Litolítico soil (RR: 1.93; CI_95%: 1.26–2.96); and, to a lesser extent, the production of tobacco (RR: 1.10; CI_95%: 1.09–1.11) and rice (RR: 1.003; CI_95%: 1.002–1.04).

Conclusion

Urban cases were concentrated in the capital and rural cases in a specific ecoregion. The major drivers identified in this study were related to environmental and production processes that are permanent features of the state. This study contributes to the basic knowledge on leptospirosis distribution and drivers in the state and encourages a comprehensive approach to address the disease in the animal-human-ecosystem interface.