The Curious Acoustic Behavior of Estuarine Snapping Shrimp: Temporal Patterns of Snapping Shrimp Sound in Sub-Tidal Oyster Reef Habitat

Ocean soundscapes convey important sensory information to marine life. Like many mid-to-low latitude coastal areas worldwide, the high-frequency (>1.5 kHz) soundscape of oyster reef habitat within the West Bay Marine Reserve (36°N, 76°W) is dominated by the impulsive, short-duration signals generated by snapping shrimp. Between June 2011 and July 2012, a single hydrophone deployed within West Bay was programmed to record 60 or 30 seconds of acoustic data every 15 or 30 minutes. Envelope correlation and amplitude information were then used to count shrimp snaps within these recordings. The observed snap rates vary from 1500–2000 snaps per minute during summer to <100 snaps per minute during winter. Sound pressure levels are positively correlated with snap rate (r = 0.71–0.92) and vary seasonally by ~15 decibels in the 1.5–20 kHz range. Snap rates are positively correlated with water temperatures (r = 0.81–0.93), as well as potentially influenced by climate-driven changes in water quality. Light availability modulates snap rate on diurnal time scales, with most days exhibiting a significant preference for either nighttime or daytime snapping, and many showing additional crepuscular increases. During mid-summer, the number of snaps occurring at night is 5–10% more than predicted by a random model; however, this pattern is reversed between August and April, with an excess of up to 25% more snaps recorded during the day in the mid-winter. Diurnal variability in sound pressure levels is largest in the mid-winter, when the overall rate of snapping is at its lowest, and the percentage difference between daytime and nighttime activity is at its highest. This work highlights our lack of knowledge regarding the ecology and acoustic behavior of one of the most dominant soniforous invertebrate species in coastal systems. It also underscores the necessity of long-duration, high-temporal-resolution sampling in efforts to understand the bioacoustics of animal behaviors and associated changes within the marine soundscape.     

Foraging ecology of Cookiecutter Sharks (<Emphasis Type="Italic">Isistius brasiliensis</Emphasis>) on pelagic fishes in Hawaii,inferred from prey bite wounds

The Cookiecutter Shark (Isistius brasiliensis) is an ecto-parasitic predator of numerous large pelagic fish and mammals. However, little is known of its foraging ecology due to its elusive foraging tactics in the pelagic environment. We used bite scar patterns on pelagic fishes landed at the Honolulu Fish Auction to assess some of the Cookiecutter Shark foraging habits. Swordfish (Xiphias gladius) had the greatest percentage of bites (87.9 ± 25.0% of individuals had healed scars) followed by Opah (Lampris guttatus, 33.0 ± 8.3% of individuals). Most fish with scars only had one Cookiecutter Shark bite per individual with the exception of Swordfish, which often had >5 bites per individual. Furthermore, Swordfish had a higher proportion of healed bite scars meaning they had been attacked while free-swimming. Seasonal changes in the probability of hooked fish being bitten by sharks were apparent for Swordfish, Bigeye Tuna and Opah. Based on bite scar diameter, larger Cookiecutter Sharks may preferentially attack Swordfish rather than the other species of pelagic fish. When taken in conjunction with diving behavior of pelagic fish, and fishing depths, the results add further support to the hypothesis that Cookiecutter Sharks perform diel vertical migrations.     

An overview of homologous pairing and DNA strand exchange proteins.

Processes fundamental to all models of genetic recombination include the homologous pairing and subsequent exchange of DNA strands. Biochemical analysis of these events has been conducted primarily on the recA protein of Escherichia coli, although proteins which can promote such reactions have been purified from many sources, both prokaryotic and eukaryotic. The activities of these homologous pairing and DNA strand exchange proteins are either ATP-dependent, as predicted based on the recA protein paradigm, or, more unexpectedly, ATP-independent. This review examines the reactions promoted by both classes of proteins and highlights their similarities and differences. The mechanistic implications of the apparent existence of 2 classes of strand exchange protein are discussed.     

Structure of the fibrinogen binding sequence: arginylglycylaspartic acid (RGD)

The crystal structure of a tetrahydrated form of L-arginyl-glycyl-L-aspartic acid (RGD), the consensus sequence for binding of fibrinogen to cell surface receptors, has been determined from diffractometer data. The tripeptide was crystallized in double zwitterionic form via hanging drop vapor diffusion experiments at a pH near 6.5. The orthorhombic unit cell contains four formula units in space group P2(1)2(1)2(1) with lattice parameters a = 4.852(4), b = 11.376(3), c = 34.083(8)A at RT. The structure was solved by direct methods and refined to a final R = 0.067 based upon 1345 observations with I greater than or equal to 2 sigma(I). Peptide bonds both are trans, omega 2 = 174.2(6) degrees and omega 3 = -169.3(6) degrees. The backbone bends at glycine with phi 2 = -85.5(8) degrees. One of the water molecules sits between the arginyl side chain and the C-terminal carboxylate, forming an intramolecular hydrogen bond to the glycyl carboxyl and linking adjacent molecules through two other H-bond interactions. Comparison of the structure to RGD sequences extracted from 3-D protein structures reveals a diversity of conformations for this tripeptide sequence.     

Fine-Scale Distribution and Spatial Variability of Benthic Invertebrate Larvae in an Open Coastal Embayment in Nova Scotia,Canada

This study quantified the fine- scale (0.5 km) of variability in the horizontal distributions of benthic invertebrate larvae and related this variability to that in physical and biological variables, such as density, temperature, salinity, fluorescence and current velocity. Larvae were sampled in contiguous 500-m transects along two perpendicular 10-km transects with a 200-µm plankton ring net (0.75-m diameter) in St. George’s Bay, Nova Scotia, Canada, in Aug 2009. Temperature, conductivity, pressure and fluorescence were measured with a CTD cast at each station, and currents were measured with an Acoustic Doppler Current Profiler moored at the intersection of the 2 transects. Gastropod, bivalve and, to a lesser extent, bryozoan larvae had very similar spatial distributions, but the distribution of decapod larvae had a different pattern. These findings suggest that taxonomic groups with functionally similar larvae have similar dispersive properties such as distribution and spatial variability, while the opposite is true for groups with functionally dissimilar larvae. The spatial variability in larval distributions was anisotropic and matched the temporal/spatial variability in the current velocity. We postulate that in a system with no strong oceanographic features, the scale of spatially coherent physical forcing (e.g. tidal periodicity) can regulate the formation or maintenance of larval patches; however, swimming ability may modulate it.     

Quantifying Characters: Polygenist Anthropologists and the Hardening of Heredity

Scholars studying the history of heredity suggest that during the 19th-century biologists and anthropologists viewed characteristics as a collection of blended qualities passed on from the parents. Many argued that those characteristics could be very much affected by environmental circumstances, which scholars call the inheritance of acquired characteristics or “soft” heredity. According to these accounts, Gregor Mendel reconceived heredity – seeing distinct hereditary units that remain unchanged by the environment. This resulted in particular traits that breed true in succeeding generations, or “hard” heredity. The author argues that polygenist anthropology (an argument that humanity consisted of many species) and anthropometry in general should be seen as a hardening of heredity. Using a debate between Philadelphia anthropologist and physician, Samuel G. Morton, and Charleston naturalist and reverend, John Bachman, as a springboard, the author contends that polygenist anthropologists hardened heredity by conceiving of durable traits that might reappear even after a race has been eliminated. Polygenists saw anthropometry (the measurement of humans) as one method of quantifying hereditary qualities. These statistical ranges were ostensibly characteristics that bred true and that defined racial groups. Further, Morton’s interest in hybridity and racial mixing demonstrates that the polygenists focused as much on the transmission and recognition of “amalgamations” of characters as they did on racial categories themselves. The author suggests that seeing race science as the study of heritable, statistical characteristics rather than broad categories helps explain why “race” is such a persistent cultural phenomenon.     

Does drainage pay? Quantifying agricultural profitability associated with wetland drainage practices and canola production in Alberta

Conversion of wetlands in cultivated agricultural landscapes is one of the primary drivers of wetland loss in Alberta, Canada, despite a provincial wetland policy that prioritizes wetland avoidance. While other sectors of the agricultural industry have established initiatives to maintain wetlands, a common narrative within the conventional cropping sector is that wetland retention leads to lost acreage and overlap of crop inputs, and that there are financial benefits associated with wetland drainage. The objective of this research was to explicitly quantify crop productivity within drained wetland basins, in an effort to better understand the extent to which producers financially benefit from drainage practices. Working collaboratively with canola producers in central Alberta over the 2019 growing season, wetland basins within four quarter sections were mapped using an Unmanned Aerial Vehicle, and wetland basins with clear evidence of surface drainage were identified. Agricultural input and yield data provided by producers was then used to quantify profitability within each drained basin. Average profit for drained basins for each producer ranged between ? $145/acre and $76/acre, with an average of $55/acre across all operations. This is compared to an average profit of $203/acre for non-wetland areas across all operations. The results suggest that the financial benefits of drainage are highly variable, and for many drained basins, producers may experience financial losses that may be overlooked when profits are examined only at the field- or operation-level. While this study included a small number of operations, and was limited to one type of crop over a single growing season, the results still provide important insight into the extent to which producers benefit financially from the practice of wetland drainage.

     

Primary Care Detection of Chronic Kidney Disease in Adults with Type-2 Diabetes: The ADD-CKD Study (Awareness,Detection and Drug Therapy in Type 2 Diabetes and Chronic Kidney Disease)

This US, multicenter, observational study assessed the CKD prevalence in adult patients with type-2 diabetes mellitus (T2DM) and characterized the proportion of detected and undiagnosed CKD in the primary care setting using the following: a clinician survey; a patient physical exam and medical history; a single blood draw for estimated glomerular filtration rate (eGFR) and glycosolated hemoglobin (HbA1c); urine dipstick for protein; urine albumin-creatinine ratio (ACR); two patient quality of life questionnaires; and a 15-month medical record review. The study consisted of 9339 adults with T2DM and 466 investigator sites. Of the 9339 enrolled, 9307 had complete data collection for analysis. The 15-month retrospective review showed urine protein, urine ACR, and eGFR testing were not performed in 51.4%, 52.9% and 15.2% of individuals, respectively. Of the 9307 patients, 5036 (54.1%) had Stage 1–5 CKD based on eGFR and albuminuria; however, only 607 (12.1%) of those patients were identified as having CKD by their clinicians. Clinicians were more successful in diagnosing patients with Stage 3–5 CKD than Stages 1 and 2. There were no differences in clinicians’ likelihood of identification of CKD based on practice setting, number of years in practice, or self-reported patients seen per week. Awareness or patient self-reported CKD was 81.1% with practitioner detection versus 2.6% in the absence of diagnosis. Primary care of T2DM demonstrates recommended urine CKD testing is underutilized, and CKD is significantly under-diagnosed. This is the first study to show CKD detection is associated with awareness.