Landscape heterogeneity shapes host‐parasite interactions and results in apparent plant–virus codivergence

Knowledge on how landscape heterogeneity shapes host–parasite interactions is central to understand the emergence, dynamics and evolution of infectious diseases. However, this is an underexplored subject, particularly for plant–virus systems. Here, we analyse how landscape heterogeneity influences the prevalence, spatial genetic structure, and temporal dynamics of Pepper golden mosaic and Pepper huasteco yellow vein begomoviruses infecting populations of the wild pepper Capsicum annuum glabriusculum (chiltepin) in Mexico. Environmental heterogeneity occurred at different nested spatial scales (host populations within biogeographical provinces), with levels of human management varying among host population within a province. Results indicate that landscape heterogeneity affects the epidemiology and genetic structure of chiltepin‐infecting begomoviruses in a scale‐specific manner, probably related to conditions favouring the viruses' whitefly vector and its dispersion. Increased levels of human management of the host populations were associated with higher virus prevalence and erased the spatial genetic structure of the virus populations. Also, environmental heterogeneity similarly shaped the spatial genetic structures of host and viruses. This resulted in the congruence between host and virus phylogenies, which does not seem to be due to host‐virus co‐evolution. Thus, results provide evidence of the key role of landscape heterogeneity in determining plant–virus interactions.     

A 36,000-yr vegetation history from the Peloncillo Mountains, southeastern Arizona, USA

A 36,200 cal yr B.P. vegetation history was developed from macrofossils and pollen from 55 packrat middens from 1287 to 1442 m elevation in the Peloncillo Mountains of southeasternmost Arizona, USA. Today, these elevations are dominated by semidesert grassland with a mixture of Chihuahuan and Sonoran Desert shrubs, including an eastern disjunct population of jojoba (Simmondsia chinensis). From 36,200 to 15,410 cal yr B.P., rocky areas just above large, pluvial lakes that occupied what are now dry playas supported Pinus edulis, Juniperus osteosperma, Juniperus cf. coahuilensis, Quercus cf. turbinella and a rich understory of summer-flowering C₄ annuals and grasses, indicating abundant summer rains and mild winters. After  15,410 cal yr B.P., P. edulis declined in abundance and disappeared briefly at 13,925 cal yr B.P., coincident with expansion of more xeric species and paleohydrological evidence for regional aridity during the Bølling–Allerød warm interval. P. edulis rebounded briefly during the Younger Dryas at 12,405 cal yr B.P. before disappearing along with other mesic woodland species sometime after 12,100 cal yr B.P. The few middens dating from the early to middle Holocene (10,000–4000 yr B.P.) indicate wetter conditions than today at 7790 cal yr B.P. followed by a general drying trend. The 35 middens from the late Holocene detail the sequential arrival of desertscrub species as vegetation became more modern in character.     

Disentangling host,pathogen, and environmental determinants of a recently emerged wildlife disease: lessons from the first 15 years of amphibian chytridiomycosis research

The amphibian fungal disease chytridiomycosis, which affects species across all continents, recently emerged as one of the greatest threats to biodiversity. Yet, many aspects of the basic biology and epidemiology of the pathogen, Batrachochytrium dendrobatidis (Bd), are still unknown, such as when and from where did Bd emerge and what is its true ecological niche? Here, we review the ecology and evolution of Bd in the Americas and highlight controversies that make this disease so enigmatic. We explore factors associated with variance in severity of epizootics focusing on the disease triangle of host susceptibility, pathogen virulence, and environment. Reevaluating the causes of the panzootic is timely given the wealth of data on Bd prevalence across hosts and communities and the recent discoveries suggesting co‐evolutionary potential of hosts and Bd. We generate a new species distribution model for Bd in the Americas based on over 30,000 records and suggest a novel future research agenda. Instead of focusing on pathogen “hot spots,” we need to identify pathogen “cold spots” so that we can better understand what limits the pathogen''s distribution. Finally, we introduce the concept of “the Ghost of Epizootics Past” to discuss expected patterns in postepizootic host communities.     

In vitro effect of malathion and diazinon on oocytes fertilization and embryo development in porcine

Diazinon and malathion are commonly used organophosphate insecticides in agriculture, industry, and in veterinary medicine as an ectoparasiticide. The importance to carry out in vitro reproductive toxicology assays lies on the need of knowing the alterations these insecticides may cause at cellular level, since they are endocrine disruptors that interfere with reproductive functions. The aim of this study was to evaluate in vitro oocyte viability, fertilization, and embryo development with different concentrations of diazinon and malathion. For in vitro fertilization (IVF), porcine oocytes and sperm were co-incubated for 7 h with increasing concentrations (50, 100, and 500 μM) of diazinon and malathion. For embryo development, fertilized oocytes were cultured in medium containing the same insecticide concentrations during 96 h for embryo development and 144 h for morulae formation. Diazinon did not affect oocyte viability and embryo divisions but decreased IVF (fertilization inhibition₅₀ = 502 μM) and morulae formation (morulae inhibition₅₀ = 344 μM). Malathion affected all the studied parameters: lethal concentration₅₀ = 1 mM, fertilization inhibition₅₀ = 443 μM, development inhibition₅₀ = 375 μM, and morulae inhibition₅₀ = 216 μM. The results of this study indicate that diazinon and malathion used in commercial formulation could be toxic, producing impairment in in vitro fertilization and embryo development. This is an approach for further investigations to find out cell damage mechanisms produced by these widely used insecticides.     

Genomewide Patterns of Substitution in Adaptively Evolving Populations of the RNA Bacteriophage MS2

Experimental evolution of bacteriophage provides a powerful means of studying the genetics of adaptation, as every substitution contributing to adaptation can be identified and characterized. Here, I use experimental evolution of MS2, an RNA bacteriophage, to study its adaptive response to a novel environment. To this end, three lines of MS2 were adapted to rapid growth and lysis at cold temperature for a minimum of 50 phage generations and subjected to whole-genome sequencing. Using this system, I identified adaptive substitutions, monitored changes in frequency of adaptive mutations through the course of the experiment, and measured the effect on phage growth rate of each substitution. All three lines showed a substantial increase in fitness (a two- to threefold increase in growth rate) due to a modest number of substitutions (three to four). The data show some evidence that the substitutions occurring early in the experiment have larger beneficial effects than later ones, in accordance with the expected diminishing returns relationship between the fitness effects of a mutation and its order of substitution. Patterns of molecular evolution seen here—primarily a paucity of hitchhiking mutations—suggest an abundant supply of beneficial mutations in this system. Nevertheless, some beneficial mutations appear to have been lost, possibly due to accumulation of beneficial mutations on other genetic backgrounds, clonal interference, and negatively epistatic interactions with other beneficial mutations.     

Participatory rural appraisal of ecosystem services of wetlands in the Amazonian Piedmont of Colombia: elements for a sustainable management concept

Considering the rapid changes in land use in tropical countries and the difficulties of law enforcement in remote areas, management of ecosystems benefits from the landscape approach. Within the landscape approach it is important to assess the different livelihoods of the local populations, as well as the vulnerability of the ecosystems that are supporting these livelihoods. Specifically for wetlands in rural tropical areas that face fast developing agro-industrial land use change, there is little information available on the attitude of stakeholders considering the ecosystems they manage. We used a combination of participatory rural appraisal and participatory mapping methods on rural wetlands in the Amazonian Piedmont region in Colombia, an area that has hardly ever been studied. We found that 77.7 % of the current livelihoods depend directly on the provisioning ecosystem services delivered by the wetlands, where fishing and hunting are the most important services that contribute to the household income. Ecotourism, which is emerging as a promising source of income, was also pointed as one key ecosystem service. However, our results revealed that the wetlands in our study area are very vulnerable (up to 41 % endangered). The main causes for wetland deterioration were cattle ranching, invasive grasses, deforestation, drainage, and burning. We conclude with a brief overview on the pros and cons of reconciling wetland conservation and human development in sensitive regions such as the Amazonian Piedmont in Colombia and other similar regions in the Tropics.     

Weight–length relationships for 38 fish species of Barra de Navidad coastal lagoon,Jalisco, Mexico

Weight–length relationships are reported for 38 species of teleost fish belonging to 20 families. Data were collected on a regular basis from February 2011 to January 2012 in the Barra de Navidad coastal lagoon, Jalisco, Mexico. Several different types of sampling gear were used to obtain a broad range of fish lengths. These are the first records in FishBase regarding weight–lengths for eight of the species.     

Pair potentials for protein folding: choice of reference states and sensitivity of predicted native states to variations in the interaction schemes

We examine the similarities and differences between two widely used knowledge-based potentials, which are expressed as contact matrices (consisting of 210 elements) that gives a scale for interaction energies between the naturally occurring amino acid residues. These are the Miyazawa-Jernigan contact interaction matrix M and the potential matrix S derived by Skolnick J et al., 1997, Protein Sci 6:676-688. Although the correlation between the two matrices is good, there is a relatively large dispersion between the elements. We show that when Thr is chosen as a reference solvent within the Miyazawa and Jernigan scheme, the dispersion between the M and S matrices is reduced. The resulting interaction matrix B gives hydrophobicities that are in very good agreement with experiment. The small dispersion between the S and B matrices, which arises due to differing reference states, is shown to have dramatic effect on the predicted native states of lattice models of proteins. These findings and other arguments are used to suggest that for reliable predictions of protein structures, pairwise additive potentials are not sufficient. We also establish that optimized protein sequences can tolerate relatively large random errors in the pair potentials. We conjecture that three body interaction may be needed to predict the folds of proteins in a reliable manner.     

Associations between Mental Health and Ebola-Related Health Behaviors: A Regionally Representative Cross-sectional Survey in Post-conflict Sierra Leone

BackgroundLittle attention has been paid to potential relationships between mental health, trauma, and personal exposures to Ebola virus disease (EVD) and health behaviors in post-conflict West Africa. We tested a conceptual model linking mental health and trauma to EVD risk behaviors and EVD prevention behaviors.ConclusionsIn post-conflict settings, past war trauma and mental health problems are associated with health behaviors related to combatting EVD. The associations between war trauma and both EVD risk behaviors and EVD prevention behaviors may be mediated through two key mental health variables: depression and PTSD symptoms. Considering the role of mental health in the prevention of disease transmission may help fight continuing and future Ebola outbreaks in post-conflict Sierra Leone. This sample is specific to Freetown and the Western Area and may not be representative of all of Sierra Leone. In addition, our main outcomes as well as personal EVD exposure, war exposures, and mental health predictors rely on self-report, and therefore raise the possibility of common methods bias. However, the findings of this study may be relevant for understanding dynamics related to EVD and mental health in other major capital cities in the EVD-affected countries of West Africa.