Horizontal cliffs: mountaintop mining and climate change

Poleward and upward shifts in ranges in plant and animal species are amongst the most confident impacts of climate change on terrestrial ecosystems. While mountain tops have long been recognised as an important limit in this regard, the implications of the practice of mountaintop removal mining, i.e., acting counter to the upward shift of species, have yet to be considered. In regions where climate warming and mountaintop mining occur together, species face increased risk of range contraction and local extinction.     

Temporal relationships in the effects of protein-free diet on the activities of rat liver branched-chain ketoacid dehydrogenase complex and kinase

Feeding rats 0% casein diet decreased liver activities of branched-chain ketoacid dehydrogenase complex (active form) and of activator protein (complete within 4 days), and increased activity of branched-chain ketoacid dehydrogenase kinase (complete within 9-10 days). Refeeding normal diet to rats fed 0% casein diet for 10 days resulted in a rapid and partial (approx. 50%) reversal of the above effects within 24 h; complete reversal required 20-30 days of refeeding.     

Cwc21p promotes the second step conformation of the spliceosome and modulates 3′ splice site selection

Pre-mRNA splicing involves two transesterification steps catalyzed by the spliceosome. How RNA substrates are positioned in each step and the molecular rearrangements involved, remain obscure. Here, we show that mutations in PRP16, PRP8, SNU114 and the U5 snRNA that affect this process interact genetically with CWC21, that encodes the yeast orthologue of the human SR protein, SRm300/SRRM2. Our microarray analysis shows changes in 3′ splice site selection at elevated temperature in a subset of introns in cwc21Δ cells. Considering all the available data, we propose a role for Cwc21p positioning the 3′ splice site at the transition to the second step conformation of the spliceosome, mediated through its interactions with the U5 snRNP. This suggests a mechanism whereby SRm300/SRRM2, might influence splice site selection in human cells.     

The construction in vitro of transducing derivatives of phage lambda

Summary Methods are described for the construction of plaque-forming, transducing derivatives of phage lambda, using appropriate receptor genomes and fragments of DNA generated by the restriction enzymes endo R.EcoRI and endo R.HindIII. The general properties of the transducing derivatives are described and discussed. Plaque-forming phages carrying the E. coli trp, his, cysB, thyA, supD, supE, supF, hsd, tna and lig genes have been isolated.     

Physical and genetic interactions of yeast Cwc21p,an ortholog of human SRm300/SRRM2, suggest a role at the catalytic center of the spliceosome

In Saccharomyces cerevisiae, Cwc21p is a protein of unknown function that is associated with the NineTeen Complex (NTC), a group of proteins involved in activating the spliceosome to promote the pre-mRNA splicing reaction. Here, we show that Cwc21p binds directly to two key splicing factors—namely, Prp8p and Snu114p—and becomes the first NTC-related protein known to dock directly to U5 snRNP proteins. Using a combination of proteomic techniques we show that the N-terminus of Prp8p contains an intramolecular fold that is a Snu114p and Cwc21p interacting domain (SCwid). Cwc21p also binds directly to the C-terminus of Snu114p. Complementary chemical cross-linking experiments reveal reciprocal protein footprints between the interacting Prp8 and Cwc21 proteins, identifying the conserved cwf21 domain in Cwc21p as a Prp8p binding site. Genetic and functional interactions between Cwc21p and Isy1p indicate that they have related functions at or prior to the first catalytic step of splicing, and suggest that Cwc21p functions at the catalytic center of the spliceosome, possibly in response to environmental or metabolic changes. We demonstrate that SRm300, the only SR-related protein known to be at the core of human catalytic spliceosomes, is a functional ortholog of Cwc21p, also interacting directly with Prp8p and Snu114p. Thus, the function of Cwc21p is likely conserved from yeast to humans.     

Variation in the quality of Vespula vulgaris (L.) queens (Hymenoptera: Vespidae) and its significance in wasp population dynamics

Abstract

Density‐related variation in queen quality has been proposed as a possible mechanism regulating population fluctuations in Vespula species. We investigated annual variation in the quality (size, weight, and fat content) of adult V. vulgaris queens representing four stages of their life cycle (spring, founding, developing, and emerged) taken from six sites in beech forest, South Island, New Zealand. For each queen the dry weight, head width, and thorax length was measured. For a subsample of queens, the fat content was determined by ether extraction. The size of queen cells was measured from a subsample of nests. Size, weight, and fat content of queens varied between wasp colonies and sites. The smallest juvenile queens were under‐represented in the reproductive population. There was no direct link between body size and food supply. Size and weight of developing queens increased as the number of cells in the nest increased. The size of the queen cells varied significantly among layers in a nest and among nests. The under‐representation of small queens in the reproductive population suggests that queen quality may affect survival and/or competitive ability by increasing winter fat storage, nest building activity, and/or success in usurpation disputes.