Estimating tree and stand sapwood area in spatially heterogeneous southeastern Australian forests

Aims Natural and anthropogenic changes in forests can have important influences on transpiration and water production. Understanding the effects of increasing disturbances, due for example to climate change and forest harvesting, requires detailed information on how forest density and structural attributes relate to transpiration. Mean annual transpiration of eucalypt forest communities is often strongly correlated with total cross-sectional sapwood area. Our aim was to test an efficient method for estimating sapwood area at 1.3 m height (SA 1.3) in a large number of trees to understand the spatial heterogeneity of tree and stand sapwood area within and between forest communities, and develop allometric relationships that predict SA 1.3 with forest inventory data. We also apply tree competition models to determine the degree to which the relationship between SA 1.3 and tree basal area at 1.3 m height (BA 1.3) is influenced by competition.Methods We visited 25 recently harvested southeastern Australian forest sites consisting of 1379 trees and 5 Eucalyptus species to evaluate a new efficient data collection method for estimating SA 1.3 with tree taper and stump dimensions data using mixed effects models. The locations of 784 stumps within one 5-ha site were accurately mapped using an unmanned aerial vehicle (UAV), and four distance-dependent tree competition models were applied across the site to explain within-stand variation in the ratio of SA 1.3 to BA 1.3. Data from 24 additional sites, consisting of ten 15 m radial plots per site, were used to analyse within-site variation in R Ha (the ratio of stand sapwood area SA Ha to stand basal area BA Ha). The radial plots were merged within each site to evaluate between-site variations in R Ha across the landscape. For predicting SA Ha with forest inventory data, we computed the relationship between SA Ha and a new index of total stem perimeter per hectare, defined as ? B A H a N T, where N T is tree stocking density.Important findings Our 1379 measured stems represent the most comprehensive measure of sapwood area, surpassing the 757 measured stems in native eucalypt forests published in literature. The species-specific R Ha varied considerably across sites and therefore extrapolating SA Ha with spatially distributed BA Ha maps and a generalized R Ha would introduce local uncertainty. We found that the species-specific stem perimeter index was more effective at capturing variability in SA Ha across the landscape using forest composition, structure and density data (R 2 : 0.72–0.77). The strong correlation between tree SA 1.3 and BA 1.3 improved slightly using tree competition models (R 2 increased from 0.86 to 0.88). Relating SA Ha to routinely measured forest inventory attributes within permanent plots and Light Detection and Ranging (LiDAR) data may provide opportunities to map forest water use in time and space across large areas disturbed by wildfire and logging.     

Management implications of the Macquarie Island trophic cascade revisited: a reply to Dowding et al. (2009)

1. The management of non-indigenous species is not without its complications. In Bergstrom et al. 's (2009) study, we demonstrated that feral cats Felis catus on sub-Antarctic Macquarie Island were exerting top-down control on the feral rabbit Oryctolagus cuniculus population, and that the eradication of the cats led to a substantial increase in rabbit numbers and an associated trophic cascade.
2. Dowding et al. (2009) claim our modelling was flawed for various reasons, but primarily that a reduction in the application of the rabbit control agent, Myxoma virus, coinciding with cat removal, was a major driver of rabbit population release.
3. We explore this proposition (as well as others) by examining rates of Myxoma viral release between 1991 and 2006 (with an attenuation factor for the years, 2003–2006) in association with presence/absence of cats against two estimates of rabbit population size. Myxoma viral release was a significant factor in the lower estimates of rabbit population, but the effect was small, and was not significant for higher rabbit population estimates. By contrast, the presence or absence of cats remained highly significant for both estimates.
4. Synthesis and applications. We re-affirm our position that top-down control of rabbit numbers by cats, prior to their eradication, was occurring on Macquarie Island. Nonetheless, we agree with Dowding et al. (2009) that systems with multiple invasive species represent complex situations that require careful scrutiny. Such scrutiny should occur in advance of, during, and following management interventions.     

Gynaecological cancers and their cell lines

Cell lines are widely used for various research purposes including cancer and drug research. Recently, there have been studies that pointed to discrepancies in the literature and usage of cell lines. That is why we have prepared a comprehensive overview of the most common gynaecological cancer cell lines, their literature, a list of currently available cell lines, and new findings compared with the original studies. A literature review was conducted via MEDLINE, PubMed and ScienceDirect for reviews in the last 5 years to identify research and other studies related to gynaecological cancer cell lines. We present an overview of the current literature with reference to the original studies and pointed to certain inconsistencies in the literature. The adherence to culturing rulesets and the international guidelines helps in minimizing replication failure between institutions. Evidence from the latest research suggests that despite certain drawbacks, variations of cancer cell lines can also be useful in regard to a more diverse genomic landscape.     

Seeing the world differently: variability in the photosensory mechanisms of two model fungi

Light plays an important role for most organisms on this planet, serving either as a source of energy or information for the adaptation of biological processes to specific times of day. The fungal kingdom is estimated to contain well over a million species, possibly 10‐fold more, and it is estimated that a majority of the fungi respond to light, eliciting changes in several physiological characteristics including pathogenesis, development and secondary metabolism. Two model organisms for photobiological studies have taken centre‐stage over the last few decades – Neurospora crassa and Aspergillus nidulans. In this review, we will first discuss our understanding of the light response in N. crassa, about which the most is known, and will then juxtapose N. crassa with A. nidulans, which, as will be described below, provides an excellent template for understanding photosensory cross‐talk. Finally, we will end with a commentary on the variability of the light response among other relevant fungi, and how our molecular understanding in the aforementioned model organisms still provides a strong base for dissecting light responses in such species.     

Probing the Diameter Limit of Single Walled Carbon Nanotubes in SWCNT: Fullerene Solar Cells

In this work, for the first time, the diameter limit of surfactant wrapped single walled carbon nanotubes (SWCNTs) in SWCNT:C₆₀ solar cells is determined through preparation of monochiral small and large diameter nanotube devices as well as those from polychiral mixtures. Through assignment of the different nanotube chiralities by photoluminescence and optical density measurements a diameter limit yielding 0% internal quantum efficiency (IQE) is determined. This work provides insights into the required net driving energy for SWCNT exciton dissociation onto C₆₀ and establishes a family of (n,m) species which can efficiently be utilized in polymer‐free SWCNT:C₆₀ solar cells. Using this approach the largest diameter nanotube with an IQE > 0% is found to be (8,6) with a diameter of 0.95 nm. Possible strategies to extend this diameter limit are then discussed.     

Immune serum to protein molecular weight standards for calibrating Western blots

A method for calibrating proteins by Western blot analysis is described. Rabbit immune serum, specific for seven protein molecular weight standards, and goat anti-rabbit horseradish peroxidase conjugate are used to visualize standards after electrotransfer onto nitrocellulose. This method can be used as a reagent and procedure control.     

Detection of hypersensitivity toLegionella pneumophila in guinea pigs by skin test

Cross-reacting antigens of three serogroups ofLegionella pneumophila differed serologically and immunologically from the serogroup-specific antigens. Intradermal injection of cross-reacting antigens into sensitized guinea pigs evoked skin hypersensitivity. Animals were sensitized either by injection of inactivatedL. pneumophila in adjuvant or by infection with live organisms. Skin reactions were measurable about 2–4 h after injection and continued to increase in intensity for the first 24 h, followed by a gradual decline over the next 48 h. Histological examination of skin reactions taken from test sites at 48 h revealed infiltration of mononuclear cells in and about the small subcutaneous blood vessels and throughout the dermis, compatible with a delayed-type reaction. The overall appearance and time course of the reaction resembled a combination of immediate and delayed types of hypersensitivity. Each cross-reacting antigen of the three serogroups evoked skin reactions in animals which had been sensitized to any of those serogroups, but was not reactive in nonsensitized animals. These observations indicate the possibility of detecting present or past infection ofL. pneumophila by skin tests.     

Galectin-1, -3 and -9 Expression and Clinical Significance in Squamous Cervical Cancer

Galectins are proteins that bind β-galactoside sugars and provide a new type of potential biomarkers and therapeutic targets in cancer. Galectin-1, -3 and -9 have become the focus of different research groups, but their expression and function in cervical cancer is still unclear. The aim of this study was to determine the phenotype of galectin-1, -3 and -9 expressing cells and the association with clinico-pathological parameters in cervical cancer. Galectin expression was scored in tumor cells, tumor epithelium infiltrating immune cells and stromal cells in squamous cervical cancer (n = 160). Correlations with clinico-pathological parameters and survival were studied according to the REMARK recommendations. We additionally investigated whether the galectins were expressed by tumor cells, fibroblasts, macrophages and T cells. Galectin-1 and -9 were both expressed by tumor cells in 11% of samples, while 84% expressed galectin-3. Strong galectin-1 expression by tumor cells was an independent predictor for poor survival (hazard ratio: 8.02, p = 0.001) and correlated with increased tumor invasion (p = 0.032) and receiving post-operative radiotherapy (p = 0.020). Weak and positive tumor cell galectin-3 expression were correlated with increased and decreased tumor invasion, respectively (p = 0.012). Tumor cell expression of galectin-9 showed a trend toward improved survival (p = 0.087). The predominant immune cell type expressing galectin-1, -3 and -9 were CD163⁺ macrophages. Galectin-1 and -3 were expressed by a minor population of T cells. Galectin-1 was mainly expressed by fibroblasts in the tumor stroma. To conclude, while tumor cell expression of galectin-9 seemed to represent a beneficial response, galectin-1 expression might be used as a marker for a more aggressive anti-cancer treatment.     

Absence of Charge Transfer State Enables Very Low VOC Losses in SWCNT:Fullerene Solar Cells

Current state‐of‐the‐art organic solar cells (OSCs) still suffer from high losses of open‐circuit voltage (V_OC). Conventional polymer:fullerene solar cells usually exhibit bandgap to V_OC losses greater than 0.8 V. Here a detailed investigation of V_OC is presented for solution‐processed OSCs based on (6,5) single‐walled carbon nanotube (SWCNT): [6,6]‐phenyl‐C₇₁‐butyric acid methyl ester active layers. Considering the very small optical bandgap of only 1.22 eV of (6,5) SWCNTs, a high V_OC of 0.59 V leading to a low E_gap/q ? V_OC = 0.63 V loss is observed. The low voltage losses are partly due to the lack of a measurable charge transfer state and partly due to the narrow absorption edge of SWCNTs. Consequently, V_OC losses attributed to a broadening of the band edge are very small, resulting in V_OC,SQ ? V_OC,rad = 0.12 V. Interestingly, this loss is mainly caused by minor amounts of SWCNTs with smaller bandgaps as well as (6,5) SWCNT trions, all of which are experimentally well resolved employing Fourier transform photocurrent spectroscopy. In addition, the low losses due to band edge broadening, a very low voltage loss are also found due to nonradiative recombination, ΔV_OC,nonrad = 0.26 V, which is exceptional for fullerene‐based OSCs.     

Mapping Sub-Antarctic Cushion Plants Using Random Forests to Combine Very High Resolution Satellite Imagery and Terrain Modelling

Monitoring changes in the distribution and density of plant species often requires accurate and high-resolution baseline maps of those species. Detecting such change at the landscape scale is often problematic, particularly in remote areas. We examine a new technique to improve accuracy and objectivity in mapping vegetation, combining species distribution modelling and satellite image classification on a remote sub-Antarctic island. In this study, we combine spectral data from very high resolution WorldView-2 satellite imagery and terrain variables from a high resolution digital elevation model to improve mapping accuracy, in both pixel- and object-based classifications. Random forest classification was used to explore the effectiveness of these approaches on mapping the distribution of the critically endangered cushion plant Azorella macquariensis Orchard (Apiaceae) on sub-Antarctic Macquarie Island. Both pixel- and object-based classifications of the distribution of Azorella achieved very high overall validation accuracies (91.6–96.3%, κ = 0.849–0.924). Both two-class and three-class classifications were able to accurately and consistently identify the areas where Azorella was absent, indicating that these maps provide a suitable baseline for monitoring expected change in the distribution of the cushion plants. Detecting such change is critical given the threats this species is currently facing under altering environmental conditions. The method presented here has applications to monitoring a range of species, particularly in remote and isolated environments.