Characterization of tetranucleotide microsatellite loci and development and validation of multiplex reactions for the study of right whale species (genus Eubalaena)

A North Atlantic right whale (Eubalaena glacialis) genomic library was developed and screened with a (GATA)₈ probe to identify tetranucleotide microsatellite loci. Sixteen characterized loci were polymorphic in North Atlantic and/or South Atlantic (Eubalaena australis) right whales, 12 being polymorphic in E. glacialis, and 15 in E. australis. Fourteen of these were combined with 21 other previously identified loci for a suite of 35 loci which can be used to increase resolution of genetic analyses of these species. Multiplex reactions were developed for genotyping samples at these loci, providing a method that is rapid, reliable and cost‐effective.     

Mineralization, pore water chemistry and phosphorus release from peaty sediments in the eutrophic Loosdrecht lakes, The Netherlands

SUMMARY. 1. Pore water chemistry in peaty sediment was monitored for a year at two representative locations of the eutrophic shallow Loosdrecht lakes. The Netherlands. Phosphorus fluxes over the sediment-water interface were calculated using measured concentration gradients in the pore water and compared to fluxes measured under laboratory conditions. Results were analysed with Redundancy Analysis to detect patterns of variation in pore water chemistry and in measured and calculated fluxes, that could be ascribed to environmental variables.
2. It was demonstrated that phosphorus fluxes measured in long-term laboratory incubations were not correlated to any of the pore water characteristics.
3. Initial phosphorus fluxes measured in sediment columns, which varied between −7.7 and 1330 μmol m⁻²: day⁻¹, were correlated significantly to the calculated phosphorus flux over the sediment-water interface.
4. The high correlation between calculated fluxes of ammonia, phosphorus and methane and measured initial flux of phosphorus, conclusively pointed to mineralization of organic matter as the driving force for phosphorus release from the sediment.
5. Redundancy Analysis demonstrated that the rates of mineralization and phosphorus release were only weakly related to temperature. They appeared to be especially stimulated by the autumnal decrease in temperature which was probably related to an extra input of organic matter.     

How river structure and biological traits influence gene flow: a population genetic study of two stream invertebrates with differing dispersal abilities

1. Determined by landscape structure as well as dispersal‐related traits of species, connectivity influences various key aspects of population biology, ranging from population persistence to genetic structure and diversity. Here, we investigated differences in small‐scale connectivity in terms of gene flow between populations of two ecologically important invertebrates with contrasting dispersal‐related traits: an amphipod (Gammarus fossarum) with a purely aquatic life cycle and a mayfly (Baetis rhodani) with a terrestrial adult stage. 2. We used highly polymorphic markers to estimate genetic differentiation between populations of both species within a Swiss pre‐alpine catchment and compared these results to the broader‐scale genetic structure within the Rhine drainage. Landscape genetic approaches were used to test for correlations of genetic and geographical structures and in‐stream barrier effects. 3. We found overall very weak genetic structure in populations of B. rhodani. In contrast, G. fossarum showed strong genetic differentiation, even at spatial scales of a few kilometres, and a clear pattern of isolation by distance. Genetic diversity decreased from downstream towards upstream populations of G. fossarum, suggesting asymmetric gene flow. Correlation of genetic structure with landscape topography was more pronounced in the amphipod. Our study also indicates that G. fossarum might be capable of dispersing overland in headwater regions and of crossing small in‐stream barriers. 4. We speculate that differences in dispersal capacity but also habitat specialisation and potentially the extent of local adaptation could be responsible for the differences in genetic differentiation found between the two species. These results highlight the importance of taking into account dispersal‐related traits when planning management and conservation strategies.     

Mutants impaired in vacuolar metal mobilization identify chloroplasts as a target for cadmium hypersensitivity in Arabidopsis thaliana

Cadmium (Cd) is highly toxic to plants causing growth reduction and chlorosis. It binds thiols and competes with essential transition metals. It affects major biochemical processes such as photosynthesis and the redox balance, but the connection between cadmium effects at the biochemical level and its deleterious effect on growth has seldom been established. In this study, two Cd hypersensitive mutants, cad1‐3 impaired in phytochelatin synthase (PCS1), and nramp3nramp4 impaired in release of vacuolar metal stores, have been compared. The analysis combines genetics with measurements of photosynthetic and antioxidant functions. Loss of AtNRAMP3 and AtNRAMP4 function or of PCS1 function leads to comparable Cd sensitivity. Root Cd hypersensitivities conferred by cad1‐3 and nramp3nramp4 are cumulative. The two mutants contrast in their tolerance to oxidative stress. In nramp3nramp4, the photosynthetic apparatus is severely affected by Cd, whereas it is much less affected in cad1‐3. In agreement with chloroplast being a prime target for Cd toxicity in nramp3nramp4, the Cd hypersensitivity of this mutant is alleviated in the dark. The Cd hypersensitivity of nramp3nramp4 mutant highlights the critical role of vacuolar metal stores to supply essential metals to plastids and maintain photosynthetic function under Cd and oxidative stresses.     

Effect of latitude on flavonoid biosynthesis in plants

The growth conditions in different latitudes vary markedly with season, day length, light quality and temperature. Many plant species have adapted well to the distinct environments through different strategies, one of which is the production of additional secondary metabolites. Flavonoids are a widely spread group of plant secondary metabolites that are involved in many crucial functions of plants. Our understanding of the biosynthesis, occurrence and function of flavonoids has increased rapidly in recent decades. Numerous studies have been published on the influence of environmental factors on the biosynthesis of flavonoids. However, extensive long‐term studies that examine the effect of the characteristics of northern climates on flavonoid biosynthesis are still scarce. This review focuses on the current knowledge about the effect of light intensity, photoperiod and temperature on the gene–environment interaction related to flavonoid biosynthesis in plants.     

Heme Proteins in Sulfide-oxidizing Bacteri/Mollusc Symbioses

SYNOPSIS. A number of bivalve mollusc species in the familiesVesicomyidae, Lucinidae and Solemyidae from sulfide-rich sedimentsharbor sulfide-oxidizing bacteria as intracellular symbiontsin gills. Cytoplasmic hemoglobin, relatively uncommon in symbiont-freegills, is a nearly constant feature in these symbiont-harboringbivalve gills and may function in the delivery of oxygen andsulfide to ensure symbiont autotrophy and host cell respiration.However, biochemical characteristics of isolated hemoglobinsfrom these species differ vastly. For example, within clamsof the same genus, gill hemoglobin concentrations vary frommicromolar to millimolar. Ligand reaction rate constants ofmultiple gill hemoglobins from a single species differ by threeorders of magnitude. Gill hemoglobins from congeners form differentderivatives in the presence of sulfide. Some hemoglobins reactavidly with hydrogen sulfide while others appear refractory.This assortment of characteristics suggests that the role ofhemoglobin in each symbiotic association cannot be generalized.