Discovering genes responsible for silk synthesis in Bombyx mori by piggyBac‐based random insertional mutagenesis

Silkworm mutants are valuable resources for both transgenic breeding and gene discovery. PiggyBac-based random insertional mutagenesis has been widely used in gene functional studies. In order to discover genes involved in silk synthesis, a piggyBac-based random insertional library was constructed using Bombyx mori, and the mutants with abnormal cocoon were particularly screened. By this means, a “thin cocoon” mutant was identified. This mutant revealed thinner cocoon shell and shorter posterior silk gland (PSG) compared with the wild type. The messenger RNA (mRNA) levels of all the three fibroin genes, including Fib-H, Fib-L and P25, were significantly down-regulated in the PSG of mutants. Four piggyBac insertion sites were identified in Aquaporin (AQP), Longitudinals lacking protein-like {Lola), Glutamyl aminopeptidase-like (GluAP) and Loc101744460. The mRNA levels of all the four genes were significantly altered in the silk gland of mutants. In particular, the mRNA amount of AQP, a gene responsible for the regulation of osmotic pressure, decreased dramatically immediately prior to the spinning stage in the anterior silk gland of mutants. The identification of the genes disrupted in the “thin cocoon” mutant in this study provided useful information for understanding silk production and transgenic breeding of silkworms in the future.     

Construction of an efficient genomic editing system with CRISPR/Cas9 in the vector mosquito Aedes albopictus

Aedes (Stegomyia) albopictus, also known as the Asian tiger mosquito, is a mosquito which originated in Asia. In recent years, it has become increasingly rampant throughout the world. This mosquito can transmit several arboviruses, including dengue, Zika and chikungunya viruses, and is considered a public health threat. Despite the urgent need of genome engineering to analyze specific gene functions, progress in genetical manipulation of Ae. albopictus has been slow due to a lack of efficient methods and genetic markers. In the present study, we established targeted disruptions in two genes, kynurenine hydroxylase (kh) and dopachrome conversion enzyme (yellow), to analyze the feasibility of generating visible phenotypes with genome editing by the clustered regularly interspaced short palindromic repeats (CRISPR)/ CRISPR-associated protein 9 (Cas9) system in Ae. albopictus. Following Cas9 single guide RNA ribonucleoprotein injection into the posterior end of pre-blastoderm embryos, 30%-50% of fertile survivors produced alleles that failed to complement existing kh and yellow mutations. Complete eye and body pigmentation defects were readily observed in GI pupae and adults, indicating successful generation of highly heritable mutations. We conclude that the CRISPR/Cas9-mediated gene editing system can be used mAe. albopictus and that it can be adopted as an efficient tool for genome-scale analysis and biological study.     

Structure and dynamics of the periphytic algae of Jinyang Lake in Shanxi Province, North China

The structure and dynamics of periphytic algae in Jinyang Lake, the largest man-made lake in Taiyuan, Shanxi, have been studied by examining the periphytic algae samples collected from four sampling stations, during March 2006 to February 2007. In total, 227 species of periphytic algae (including varieties), belonging to three divisions, 27 families, 62 genera, have been identified. Diatoms were the dominant periphytic algae group. Taken the Shannon–Weaver, Margalef and Simpson diversity index together, it showed obvious temporal and spatial dynamics among different seasons and different sampling stations. The highest periphytic community structure evenness appeared at sampling station I in spring, summer and autumn, while at sampling station III in winter. The average biomass of periphytic algae varied from seasons. Our data showed that major factors affecting the periphytic algae in Jinyang Lake was water temperature, nutrient levels as well as human activities. In addition, the main effect caused by thermal power plant has been discussed.     

Investigation of bacterial community diversity in water of Zoige Alpine Wetland

Spatial isolation is currently thought to represent one of the major factors resulting in bacteria genetic variation and population abundance. The bacterial diversity in a distinct environment Zoige Alpine Wetland located in the northeast of the Qinghai-Tibetan Plateau with the altitude 3400 m on average aroused our great attention. This area belongs to Qinghai-Tibetan cold climate zone with the mean annual temperature about 1 °C. Although several studies on bacterial diversity in Qinghai-Tibetan Plateau had been reported, there is no report on wetland water in this area. In this work, six water samples were collected and the water qualities including COD_Cr, NH₄⁺-N, NO₃^--N, NO₂^--N, TN, TP, TOC were investigated, of which results indicated that more than 80% samples sorted as II–V class of surface water sources according to the National Water Quality Standard of China (GB3838-2002). Comparison of bacterial communities among the six samples was analyzed by DGGE of PCR-amplified 16S rDNA with universal bacterial primer sets. The profiles demonstrated that samples from the Flower Lake had more DNA bands than the Conservatory Station inferring higher diversity. In addition, the samples from the same environment shared similar compositions of bacterial communities. Bacterial community composition and predominant bacteria were analyzed by 16S rDNA clone library. The dominant group was Proteobacteria (51.6% of the total clones, which contained 24.2% alpha proteobacteria, 14.5% beta proteobacteria and 12.9% gamma proteobacteria). And the Bacteroidetes added to 17.7%, Verrucomicrobia to 4.8%. More than 24.2% of the total clones showed high similarity to uncultured bacteria. The above work provides some information on bacterial diversity for special site of spatial isolation.     

Overview of the diversity of erythrocyte blood group antigens

During the differentiation and maturation of erythrocytes, the surface molecules of erythrocytes are gradually expressed and stabilized. These molecules are to be antigenic in addition to their functions of maintaining cell membrane structural stability, material transport and exchange of cells and signal transmission between cells. The antigenic molecules on the erythrocyte surface are called erythrocyte blood group antigens. The blood group antigens and their corresponding blood group antibodies in vivo are important indicators for clinical blood transfusion and organ transplantation, and also form the basis for research on blood group related diseases. Three hundred and sixty-eight erythrocyte blood group antigens have been confirmed so far, which are classified into 39 blood group systems, 5 blood group collections and 2 blood group series. Based on the diversity of blood group antigens and their composition of glycolipids, glycoproteins and other molecules, this study mainly reviews the classification, molecular structure, antibody response and gene regulation of blood group antigens, and explains the main reasons for the diversity of blood group antigens.     

Defining endogenous barcoding sites for CRISPR/Cas9-based cell lineage tracing in zebrafish

There is a growing interest in developing experimental methods for tracking the developmental cell lineages of a complex organism.The recently developed CRISPR/Cas9-based barcoding method is,although highly promising,difficult to scale up because it relies on exogenous barcoding sequences that are engineered into the genome.In this study,we characterized 78 high-quality endogenous sites in the zebrafish genome that can be used as CRISPR/Cas9-based barcoding sites.The 78 sites are all highly expressed in most of the cell types according to single-cell RNA sequencing(scRNA-seq)data.Hence,the barcoding information of the 78 endogenous sites is recovered by the available scRNA-seq platforms,enabling simultaneous characterization of cell type and cell lineage information.     

Coupling effects of altitude and human disturbance on landscape and plant diversity in the vicinity of mountain villages of Beijing, China

Villages represent the source of human disturbance in mountain regions, but how they alter surrounding landscapes and further affect plant diversity distribution along altitudinal gradient is still not well documented. Although the unimodal pattern along latitudinal gradient and the hypothesis of immediate disturbance (IDH) have been supported in many studies, their coupling effects on plant diversity distribution have been given less attention. In this paper, the coupling effects surrounding mountain villages were detected: (1) altitude determined the mountain landscape at regional scale, while human disturbance altered landscape fragmentation and diversity at local scale surrounding villages. (2) With the reducing human disturbance away from villages, plant diversity decreased, then increased, and finally decreased in different land uses. The plant diversity of shrubs reached the lowest. With the increasing altitude, plant diversity of the forest represented the unimodal trend, but other land use types had different properties. (3) The mechanism of the coupling effects is that the combination of topographic and soil factors determines plant diversity distribution at both landscape and plant community levels surrounding villages.     

Analysis of fungal community structure in the soil of Zoige Alpine Wetland

To understand the soil fungal community diversity in different zones of the Zoige Alpine Wetland, BIOLOG analysis and traditional culture method were employed in our research. Three sample sites namely the Conservatory Station up-hill slope (CSUS), the Flower Lake side (FLS) and the Conservatory Station down slope (CSDS) with increasing by water content were investigated. The results of BIOLOG showed that fungal catabolic richness index (S) and Shannon diversity index (H) increasingly rose with water content augmented from CSUS to CSDS, while different from the former tendency, the fungal catabolic activity was highest at CSDS and lowest at FLS. Principal component analysis (PCA) results demonstrated the functional diversity of fungal community varied among the three sample sites, showing us more similarity between CSDS and FLS, and considerable difference between CSUS and the former two sites. The outcome of traditional culture method illustrated the number of soil fungi increased from CSUS to CSDS, while the sort of fungal species that could be cultured did not show much difference among the three sample sites.     

老年痴呆症相关基因Nicastrin的转录调控

APP蛋白经过降解,形成老年痴呆症患者脑内老年斑的主要成分.由PS(早老素),NCT,PEN-2和APH-14种膜蛋白组成的γ分泌酶催化该降解过程.为了了解人类nicastrin(NCT)基因的转录调控机制,确定了其在人脑中的转录起始位点以及其编码区上游大小不等片段的转录起始活性.EMSA分析证实NCT启动子区的4个AP-1结合位点和2个NFAT结合位点能够与相应的转录因子结合,能够改变转录因子调控能力的定点突变和PDTC诱导使得NCT启动子在HeLa细胞和人鼠皮质神经元中的启动活性都有所改变.以上结果说明:AP-1和NFAT确实参与了人类NCT基因的转录调控.     

核定位信号肽提高核糖体区打靶载体转染效率的研究

核糖体区打靶载体(10～14 kb)是中南大学医学遗传学国家重点实验室构建的一种具有定点整合能力的非病毒载体,具有安全性好及长期稳定表达的特点,但是较低的转染率成为其应用于临床的主要障碍．核定位信号肽可以促进非病毒载体进入细胞核,从而提高其转染效率．但是核定位信号肽提高外源基因表达的能力却严重受到其与DNA偶联方式及偶联剂的影响．采用偶联剂SPB可以通过静电作用将核糖体区打靶载体与SV40 核定位信号肽有效结合,并且可以防止其被DNase降解．应用聚乙烯亚胺转染人原代皮肤成纤维细胞后,激光共聚焦显微镜观察显示,核定位信号肽可以在60 min内携带12 kb的质粒DNA进入细胞核．转染后48 h,流式细胞仪检测GFP表达,结果显示转染率提高了4～5倍．聚乙烯亚胺是一种毒性小,而且价格低廉的高分子转染试剂,广泛被应用于体内基因治疗的研究中,上述研究将会促进核糖体区打靶载体在临床基因治疗中的应用．