Involvement of auxin pathways in modulating root architecture during beneficial plant–microorganism interactions

A wide variety of microorganisms known to produce auxin and auxin precursors form beneficial relationships with plants and alter host root development. Moreover, other signals produced by microorganisms affect auxin pathways in host plants. However, the precise role of auxin and auxin‐signalling pathways in modulating plant–microbe interactions is unknown. Dissecting out the auxin synthesis, transport and signalling pathways resulting in the characteristic molecular, physiological and developmental response in plants will further illuminate upon how these intriguing inter‐species interactions of environmental, ecological and economic significance occur. The present review seeks to survey and summarize the scattered evidence in support of known host root modifications brought about by beneficial microorganisms and implicate the role of auxin synthesis, transport and signal transduction in modulating beneficial effects in plants. Finally, through a synthesis of the current body of work, we present outstanding challenges and potential future research directions on studies related to auxin signalling in plant–microbe interactions.     

Evolution of the population structure of Venturia inaequalis,the apple scab fungus,associated with the domestication of its host

Evaluating the impact of plant domestication on the population structure of the associated pathogens provides an opportunity to increase our understanding of how and why diseases emerge. Here, we investigated the evolution of the population structure of the apple scab fungus Venturia inaequalis in response to the domestication of its host. Inferences were drawn from multilocus microsatellite data obtained from samples collected on (i) the Central Asian Malus sieversii, the main progenitor of apple, (ii) the European crabapple, Malus sylvestris, a secondary progenitor of apple, and (iii) the cultivated apple, Malus×domestica, in orchards from Europe and Central Asia. Using clustering methods, we identified three distinct populations: (i) a large European population on domesticated and wild apples, (ii) a large Central Asian population on domesticated and wild apples in urban and agricultural areas, and (iii) a more geographically restricted population in M. sieversii forests growing in the eastern mountains of Kazakhstan. Unique allele richness and divergence time estimates supported a host‐tracking co‐evolutionary scenario in which this latter population represents a relict of the ancestral populations from which current populations found in human‐managed habitats were derived. Our analyses indicated that the domestication of apple induced a significant change in the genetic differentiation of populations of V. inaequalis in its centre of origin, but had little impact on its population dynamics and mating system. We discuss how the structure of the apple‐based agrosystem may have restricted changes in the population structure of the fungus in response to the domestication of its host.     

Discongruence of Mhc and cytochrome b phylogeographical patterns in Myodes glareolus (Rodentia: Cricetidae)

In the present study, a phylogeographical approach was developed to analyse the influence of selection and history on a major histocompatibility complex (Mhc) class II gene polymorphism in European bank vole (Myodes glareolus) populations. We focused on exon 2 of the Dqa gene because it is highly variable in a large array of species and appears to evolve under pathogen‐mediated selection in several rodent species. Using single‐strand conformation polymorphism analysis and sequencing techniques, 17 Dqa‐exon2 alleles, belonging to at least two different copies of Dqa gene, were detected over the distribution range of M. glareolus. Evidence of selection was found using molecular and population analyses. At the molecular level, we detected 13 codons evolving under positive selection pressures, most of them corresponding to regions coding for putative antigen binding sites of the protein. At the European level, we compared patterns of population structure for the Dqa‐exon2 and cytochrome b (cyt b) gene. We did not detect any spatial genetic structure among M. glareolus populations for the Dqa‐exon2. These results strongly differed from those obtained using the cyt b gene, which indicated a recent phylogeographical history closely linked to the last glacial events. Seven mitochondrial lineages have yet been described, which correspond to major glacial refugia. Altogether, our results revealed clear evidence of balancing selection acting on Dqa‐exon2 and maintaining polymorphism over large geographical areas despite M. glareolus history. It is thus likely that Mhc phylogeographical variability could have been shaped by local adaptation to pathogens. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 105 , 881–899.     

Nutrient dependent effects of consumer identity and diversity on freshwater ecosystem function

1. Over the past decade, ecologists have tried to determine how changes in species composition and diversity affect ecosystem structure and function. Until recently, the majority of these studies have been conducted in terrestrial ecosystems and have not taken into account environmental variability. The purpose of this research was to determine how species identity and diversity in the freshwater zooplankton affected biomass of algae and zooplankton at two levels of nutrient enrichment.
2. Several species of cladocerans were grown alone and together in microcosms at both ambient and raised phosphorus concentrations to determine if the effects of consumer identity and diversity were nutrient dependent.
3. Total zooplankton biomass was greater, while algal biomass was lower, in mixed culture than in monoculture. The effects of zooplankton diversity on algal biomass, however, were only observed at raised phosphorus concentrations, suggesting that diversity effects were nutrient dependent. Specifically, diversity effects appeared to be related with biological mechanisms such as complementarity in resource use and/or facilitation.
4. More diverse communities of zooplankton appear to be better able to control algae than single species of zooplankton at high nutrient concentrations; therefore, zooplankton diversity may provide a buffer against eutrophication in freshwater ecosystems.     

Climatic signals in tree‐rings of Araucaria angustifolia in the southern Brazilian highlands

Araucaria angustifolia (Bertol.) O. Kuntze (Araucariaceae) is a Neotropical tree, widely distributed in subtropical mountain rain forests and nearby natural grasslands of Southern Brazil. This species produces annual growth rings, but its dendroclimatic potential is barely known. In the present paper, the long‐term growth patterns of A. angustifolia were investigated using annual growth ring time series and association to climate over the last century. Wood cores of A. angustifolia trees growing in forest and grassland habitats were obtained with an increment borer. The cores were surfaced, measured and cross‐dated. The dated ring‐width time series were standardized and submitted to correlation and principal component analysis to verify growth trends among sites and trees. Growth‐climate relationships were investigated using correlation and regression analyses, comparing the ordination axes scores to regional time series of precipitation and temperature. Due to anatomical irregularities, mainly partial rings, only 35 out of 60 trees were cross‐dated. The correlation and ordination analyses showed common tree‐growth trends within and between sites, indicative of a regional environmental force determining inter‐annual cambial activity variation. Despite growing in distinct habitats and disturbance regimes, A. angustifolia trees share a common long‐term growth pattern, which is significantly related to thermal conditions during the current and previous growing seasons. Moreover, site‐specific characteristics may have influenced opposite growth responses and association to climate conditions between forest and grassland trees.     

Predicting the current distribution and potential spread of the exotic grass Eragrostis plana Nees in South America and identifying a bioclimatic niche shift during invasion

Eragrostis plana (Poaceae) is a perennial grass introduced from South Africa to the state of Rio Grande do Sul in southern Brazil. Currently, it is considered an invasive grass in several regions of the world, including South America, where it has caused negative ecological and socio‐economic impacts. Ecological niche models, using bioclimatic variables, are often used to predict the potential distribution of invasive species. In this study we prepared two bioclimatic models for E. plana using the Genetic Algorithm for Rule‐set Production, the first based on data from its native region (South Africa) and the second on data from both the native and invaded (South America) regions. We then projected each model onto South America to identify regions vulnerable to invasion by the species, and compared our results with available records of the species in South America. Finally, we explored the model's predictions for the existence of a bioclimatic niche shift during the invasion process of E. plana in South America, using multivariate statistical analysis. The model created with native distribution data was only able to predict (with highly suitable habitat) the region of introduction of E. plana in South America. However, the current distribution, as well as the region of introduction of the species, was reliably predicted by the model created with data from both native and invaded regions. Our multivariate analysis supports a hypothesis of bioclimatic niche shift during the invasion process of E. plana in South America.     

Abiotic effects predominate under prolonged livestock‐induced disturbance

Despite the widespread recognition that disturbance by livestock affects multiple indices of landscape health, few studies have examined their effects on both biotic and abiotic processes. We examined the effects of livestock disturbance on soil, vascular plants and reptiles across a disturbance gradient in a semi‐arid Australian woodland. Our gradient ranged from long‐ungrazed water remote sites, through intermediately grazed recovering sites, to currently grazed sites close to water. Our aim was to examine the nature of the effects of grazing‐induced disturbance on biotic and abiotic processes along the gradient. We detected small biotic effects, but no abiotic effects, at low levels of disturbance (intermediate sites). We could not detect a consistent biotic effect on plants or reptiles along the gradient, except between the extreme disturbances. In contrast, we recorded substantial reductions in abiotic structure and function at the most disturbed sites. Structural changes included reductions in the cover of shrub hummocks and increases in bare soil, and reductions in cryptogamic soil crusts. Structural changes were associated with declines in function (soil stability and nutrient indices). Our data are consistent with the notion that abiotic effects predominate at high levels of disturbance in rangelands. Given the extent of abiotic modification at currently grazed sites, the cover of abiotic elements such as hummocks and soil surfaces would seem a better indicator of the long‐term effect of grazing‐induced disturbance than biotic components. The extent of disturbance at currently grazed sites across large areas of rangeland suggests that autogenic recovery will be protracted.     

Phenotypic engineering: using hormones to explore the mechanistic and functional bases of phenotypic variation in nature

Perhaps the best way to determine whether and how traits of organisms are currently adaptive is to alter them experimentally and compare the relative fitness of altered and unaltered individuals. We call this method phenotypic engineering. To the extent that natural selection moulds organisms on a trait-by-trait basis, we would expect fitness of unmanipulated (control) individuals to be higher than that of experimentally altered individuals. However, other outcomes are possible and of interest. If, for example, a single trait were altered and the fitness of manipulated and unmanipulated organisms were found to be similar, we might conclude that selection is not currently operating on the altered trait. Phenotypic engineering with hormones describes an experimental approach to the study of adaptive variation in suites of traits that are hormonally mediated and correlated in their expression. A likely outcome of such manipulations is that some traits would be altered so as to elevate fitness but that changes in other, correlated traits would lower fitness. If the net effect were to depress fitness, a process by which natural selection shapes and maintains organisms as integrated units would be demonstrated. We have employed this approach in studies of the Dark-eyed Junco Junco hyemalis, a small passerine whose reproductive success varies with the abundance of nest predators. We treated males with testosterone, documented the phenotypic consequences and related these to various measures of fitness. Summarizing results to date: Behavioural comparison of males treated with testosterone (T-males) and control males (C-males) shows that T-males sing more frequently, are less attentive to offspring, have larger home ranges and are more attractive to females. Physiologically, testosterone accelerates entry into breeding condition in spring (loss of winter lipid stores) and results in higher levels of corticosterone. If exposure to testosterone is prolonged beyond the breeding season, pre-basic moult is delayed or prevented. We are currently comparing T- and C-males with respect to corticosteroid binding proteins, sperm reserves, response to nestling vocalizations and neuroanatomy. The relationship between testosterone-induced phenotypic variation and fitness is still under study. When treatment extends well beyond the breeding season, testosterone significantly reduces survivorship; otherwise it does not. With respect to apparent reproductive success (i.e. estimates of paternity that are not based on genetic analysis), more young leave the nests of C-males than of T-males, but treatment groups do not differ in the number of young that reach independence. Preliminary data on realized reproductive success (i.e. number of genetic offspring sired) suggest that production as the result of extra-pair fertilizations is greater in T- than in C-males but that T-males lose paternity of more of the offspring of their social mates to other males. Continued investigation will, we hope, reveal the factors governing the trade-offs between male mating effort and parental effort and between survival and current reproduction, as well as the frequency with which the typical phenotype outperforms one that has been experimentally altered.