Characterization of oil and starch accumulation in tubers of Cyperus esculentus var. sativus (Cyperaceae): A novel model system to study oil reserves in nonseed tissues

? Premise of the study: Storage oil (triacylglycerol) accumulates in tissues such as the embryo and endosperm of seeds and the fruit mesocarp, but seldom in underground organs. As a rare exception, cultivated variants of yellow nutsedge (Cyperus esculentus) contain high amounts of both oil and starch in the mature tubers. ? Methods: Biochemical analyses and light and electron microscopy were used to study the accumulation patterns of storage nutrients in developing nutsedge tubers. ? Key results: During the initial phase of tuber development, the conducting rhizome tissue is transformed into a storage compartment, then massive storage reserves accumulate in the tuber. At the beginning of tuber development, a large sugar load coincided with the onset of starch accumulation. Oil accumulation started later, concomitant with a substantial drop in the sugar content. Initially, oil accumulated at a lower rate compared to starch, but the rate later increased; after 6 wk, oil made up 24% of tuber dry mass, while starch made up 32%. Protein concentration changed only a small amount throughout this development. Oil and starch accumulated in the same cells throughout the tubers in a sequential fashion during tuber development. ? Conclusions: The developmental pattern in the build up of storage nutrients in the tubers highlights nutsedge as a novel model plant, having potential to significantly widen our understanding on how synthesis of storage reserves, and in particular oils, is regulated and directed in nonseed tissues such as tubers and roots.     

Predator–prey encounter rates in freshwater piscivores: effects of prey density and water transparency

One of the most fundamental components of predator–prey models is encounter rate, modelled as the product of prey density and search efficiency. Encounter rates have, however, rarely been measured in empirical studies. In this study, we used a video system approach to estimate how encounter rates between piscivorous fish that use a sit-and-wait foraging strategy and their prey depend on prey density and environmental factors such as turbidity. We first manipulated prey density in a controlled pool and field enclosure experiments where environmental factors were held constant. In a correlative study of 15 freshwater lakes we then estimated encounter rates in natural habitats and related the results to both prey fish density and environmental factors. We found the expected positive dependence of individual encounter rates on prey density in our pool and enclosure experiments, whereas the relation between school encounter rate and prey density was less clear. In the field survey, encounter rates did not correlate with prey density but instead correlated positively with water transparency. Water transparency decreases with increasing prey density along the productivity gradient and will reduce prey detection distance and thus predator search efficiency. Therefore, visual predator–prey encounter rates do not increase, and may even decrease, with increasing productivity despite increasing prey densities.     

Active selection for large guppies, Poecilia reticulata, by the pike cichlid, Crenicichla saxatilis

Size-selective predation has been proposed to be one important evolutionary force shaping life-history traits in guppies ( Poecilia reticulata ). Populations living in the presence of the ring-tailed pike cichlid ( Crenicichla saxatilis ) are smaller, mature earlier, allocate more energy to offspring and get more and smaller young than guppies in localities without Crenicichla . We investigated if Crenicichla saxatilis is a size-selective predator, if the selectivity is a result of active choice and if the optimal prey size can be explained according to an optimal foraging model. In single-prey experiments we quantified the predators' pre-capture costs (time), capture success, and post-capture costs (time) for four different prey sizes spanning from 10 to 40 mm total length. To see which of the components of the prey cycle the predator takes into account for its choice, we then predicted prey values and optimal prey size with 6 different models that included one or more of the prey cycle components.
In two multiple prey experiments, the cichlids were given the choice of the two and four different prey sizes simultaneously. Crenicichla saxatilis actively selected the largest guppies in both cases. The three prey-value functions that included handling time (post-capture cost) did not accurately predict the prey choice. Instead the prey-value functions that took into account pre-capture cost (approach and attack time) were able to correctly predict the choice of the largest guppy size, suggesting that pre-capture costs may be more important than post-capture costs for prey choice in Crenicichla saxatilis . The study confirms that Crenicichla saxatilis is a size-selective predator selecting large guppies, while earlier evidence for selectivity for large prey in Crenicichla cichlids has been weak and equivocal. Our result strengthen the possibility that size-selective predation is a mechanism in life-history evolution in guppies.     

Late onset of NMDA receptor-mediated ventilatory control during early development in zebrafish (Danio rerio)

Increased ventilation frequency (fV) in response to hypoxia in adult fish depends on ionotropic N-methyl-D-aspartate (NMDA) receptors. Nonetheless, the ontogeny of central control mechanisms mediating hypoxic ventilatory chemoreflexes in lower vertebrates has not been studied. Therefore, the aim of this study was to determine when the hypoxic ventilatory response during zebrafish (Danio rerio) development is mediated via NMDA receptors, by performing physiological experiments and western blot analysis of NMDA receptor subunits. Zebrafish larvae at stages 4-16 days post-fertilisation (dpf) were exposed to an hypoxic pulse in control groups and in groups treated with MK801 (NMDA receptor antagonist). The hypoxic increase in fV was present at all larval stages, and it matured during development. The reflex became MK801 sensitive at 8 dpf, but did not completely rely on a glutamatergic transmission until 13 dpf. This, together with changing subunit composition during the different stages (increasing amounts of NMDAR1 subunits and appearance of NMDAR2A subunits in adults), suggests that the amount of functional NMDA receptors needed to achieve a fully developed reflex is not attained until later stages. Furthermore, our results suggest that other non-NMDA receptor mechanisms are responsible for the hypoxia-induced increase in fV during the earlier developmental stages.     

Predator-induced morphology enhances escape locomotion in crucian carp

Fishes show a remarkable diversity of shapes which have been associated with their swimming abilities and anti-predator adaptations. The crucian carp (Carassius carassius) provides an extreme example of phenotypic plasticity in body shape which makes it a unique model organism for evaluating the relationship between body form and function in fishes. In crucian carp, a deep body is induced by the presence of pike (Esox lucius), and this results in lower vulnerability to gape-limited predators, such as pike itself. Here, we demonstrate that deep-bodied crucian carp attain higher speed, acceleration and turning rate during anti-predator responses than shallow-bodied crucian carp. Therefore, a predator-induced morphology in crucian carp enhances their escape locomotor performance. The deep-bodied carp also show higher percentage of muscle mass. Therefore, their superior performance in escape swimming may be due to a combination of higher muscle power and higher thrust.     

Silencing of EEF2K (eukaryotic elongation factor-2 kinase) reveals AMPK-ULK1-dependent autophagy in colon cancer cells

EEF2K (eukaryotic elongation factor-2 kinase), also known as Ca²⁺/calmodulin-dependent protein kinase III, functions in downregulating peptide chain elongation through inactivation of EEF2 (eukaryotic translation elongation factor 2). Currently, there is a limited amount of information on the promotion of autophagic survival by EEF2K in breast and glioblastoma cell lines. However, the precise role of EEF2K in carcinogenesis as well as the underlying mechanism involved is still poorly understood. In this study, contrary to the reported autophagy-promoting activity of EEF2K in certain cancer cells, EEF2K is shown to negatively regulate autophagy in human colon cancer cells as indicated by the increase of LC3-II levels, the accumulation of LC3 dots per cell, and the promotion of autophagic flux in EEF2K knockdown cells. EEF2K negatively regulates cell viability, clonogenicity, cell proliferation, and cell size in colon cancer cells. Autophagy induced by EEF2K silencing promotes cell survival and does not potentiate the anticancer efficacy of the AKT inhibitor MK-2206. In addition, autophagy induced by silencing of EEF2K is attributed to induction of protein synthesis and activation of the AMPK-ULK1 pathway, independent of the suppression of MTOR activity and ROS generation. Knockdown of AMPK or ULK1 significantly abrogates EEF2K silencing-induced increase of LC3-II levels, accumulation of LC3 dots per cell as well as cell proliferation in colon cancer cells. In conclusion, silencing of EEF2K promotes autophagic survival via activation of the AMPK-ULK1 pathway in colon cancer cells. This finding suggests that upregulation of EEF2K activity may constitute a novel approach for the treatment of human colon cancer.     

Escape latency is size independent in grey mullet

Using grey mullet Mugil cephalus as a model species, the hypothesis that escape latency increases with body size was tested. Minimum escape latency was c . 10 ms (mean ± s . d . 18·1 ± 13·7 ms; range 8–72 ms) and was independent of body size.