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1.
A highly polymorphic locus cloned from the breakpoint of a chromosome 11p13 deletion associated with the WAGR syndrome 总被引:2,自引:0,他引:2
Tom Glaser D. J. Driscoll Stylianos Antonarakis David Valle David Housman 《Genomics》1989,5(4):880-893
Children with constitutional deletions of chromosome 11p13 suffer from aniridia, genitourinary malformations, and mental retardation and are predisposed to develop bilateral Wilms tumor (the WAGR syndrome). The critical region for these defects has been narrowed to a segment of band 11p13 between the catalase and the beta-follicle-stimulating hormone genes. In this report, we have cloned the endpoints from a WAGR patient whose large cytogenetic deletion, del(11)(p14.3::p13), does not include the catalase gene. The deletion was characterized using DNA polymorphisms and found to originate in the paternally derived chromosome 11. The distal endpoint was identified as a rearrangement of locus D11S21 in conventional Southern blots of the patient's genomic DNA, but was not detected in leukocyte DNA from either parent or in sperm DNA from the father. The proximal endpoint was isolated by cloning the junction fragment and was mapped in relation to other markers and breakpoints. It defines a new locus in 11p13-delta J, which is close to the Wilms tumor gene and the breakpoint cluster region (TCL2) of the frequent t(11;14)(p13;q11) translocation in acute T-cell leukemia. An unusual concentration of base pair substitutions was discovered at delta J, in which 9 of 44 restriction sites tested (greater than 20%) vary in the population. This property makes delta J one of the most polymorphic loci on chromosome 11 and may reflect an underlying instability that contributed to the original mutation. The breakpoint extends the genetic map of this region and provides a useful marker for linkage studies and the analysis of allelic segregation in tumor cells. 相似文献
2.
Stylianos Mamatas-Kalamaras Thierry Sévenet Claude Thal Pierre Potier 《Phytochemistry》1975,14(7):1637-1639
Five alkaloids have been isolated from Alstonia vitiensis: pleïocarpamine, vincorine, cabucraline, alstovine (11-methoxycompactinervine) and quaternoxine; the latter two are new alkaloids. 相似文献
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Stylianos Delivopoulos 《欧洲藻类学杂志》2013,48(3):329-338
The apex of the tetrasporangial branches of Osmundea spectabilis var. spectabilis (= Laurencia spectabilis var. spectabilis) exhibits cavities in which tufts of multicellular trichoblasts occur. Trichoblast development in Osmundea spectabilis var. spectabilis begins with the differentiation of an epidermal cell within the crypt. This cell differentiates into a trichoblast mother cell (TMC). The TMC divides to form a two-celled incipient trichoblast. Successive periclinal divisions of the apical cell of the young trichoblast result in the formation of a multicellular developing trichoblast. With the exception of the apical cell all trichoblast cells are at the same developmental stage. They possess a large nucleus, abundant plastids with peripheral and some internal thylakoids and dictyosomes. Daughter chloroplasts result from one constriction or multiple fission of a single chloroplast. Dictyosomal cisternae and mucilage sacs contribute material to wall formation. Each differentiating trichoblast cell is surrounded by a bi-layered wall. The outer wall layer represents the trichoblast mother cell wall and the inner wall layer is the trichoblast cell wall. Mature trichoblast cells have thin walls, probably as a consequence of mucilage extrusion, the most likely function of trichoblasts in Osmundea. 相似文献
5.
Periklis?Makrythanasis Michel?Guipponi Federico?A.?Santoni Maha?Zaki Mahmoud?Y.?Issa Muhammad?Ansar Hanan?HamamyEmail author Stylianos?E.?AntonarakisEmail author 《Human genomics》2016,10(1):26
Background
The recent availability of whole-exome sequencing has opened new possibilities for the evaluation of individuals with genetically undiagnosed intellectual disability.Results
We report two affected siblings, offspring of first-cousin parents, with intellectual disability, hypotonia, short stature, growth hormone deficiency, and delayed bone age. All members of the nuclear family were genotyped, and exome sequencing was performed in one of the affected individuals. We used an in-house algorithm (CATCH v1.1) that combines homozygosity mapping with exome sequencing results and provides a list of candidate variants. One identified novel homozygous missense variant in KALRN (NM_003947.4:c.3644C>A: p.(Thr1215Lys)) was predicted to be pathogenic by all pathogenicity prediction software used (SIFT, PolyPhen, Mutation Taster). KALRN encodes the protein kalirin, which is a GTP-exchange factor protein with a reported role in cytoskeletal remodeling and dendritic spine formation in neurons. It is known that mice with ablation of Kalrn exhibit age-dependent functional deficits and behavioral phenotypes.Conclusion
Exome sequencing provided initial evidence linking KALRN to monogenic intellectual disability in man, and we propose that KALRN is the causative gene for the autosomal recessive phenotype in this family.6.
Daniela Bustos‐Korts Ian K. Dawson Joanne Russell Alessandro Tondelli Davide Guerra Chiara Ferrandi Francesco Strozzi Ezequiel L. Nicolazzi Marta Molnar‐Lang Hakan Ozkan Maria Megyeri Peter Miko Esra akr Enes Yakr Noemi Trabanco Stefano Delbono Stylianos Kyriakidis Allan Booth Davide Cammarano Martin Mascher Peter Werner Luigi Cattivelli Laura Rossini Nils Stein Benjamin Kilian Robbie Waugh Fred A. van Eeuwijk 《The Plant journal : for cell and molecular biology》2019,99(6):1172-1191
Broadening the genetic base of crops is crucial for developing varieties to respond to global agricultural challenges such as climate change. Here, we analysed a diverse panel of 371 domesticated lines of the model crop barley to explore the genetics of crop adaptation. We first collected exome sequence data and phenotypes of key life history traits from contrasting multi‐environment common garden trials. Then we applied refined statistical methods, including some based on exomic haplotype states, for genotype‐by‐environment (G×E) modelling. Sub‐populations defined from exomic profiles were coincident with barley's biology, geography and history, and explained a high proportion of trial phenotypic variance. Clear G×E interactions indicated adaptation profiles that varied for landraces and cultivars. Exploration of circadian clock‐related genes, associated with the environmentally adaptive days to heading trait (crucial for the crop's spread from the Fertile Crescent), illustrated complexities in G×E effect directions, and the importance of latitudinally based genic context in the expression of large‐effect alleles. Our analysis supports a gene‐level scientific understanding of crop adaption and leads to practical opportunities for crop improvement, allowing the prioritisation of genomic regions and particular sets of lines for breeding efforts seeking to cope with climate change and other stresses. 相似文献
7.
Toward a better understanding of the "Transverse Range break": lineage diversification in southern California 总被引:1,自引:0,他引:1
Chatzimanolis S Caterino MS 《Evolution; international journal of organic evolution》2007,61(9):2127-2141
The Transverse Ranges in southern California have been identified as having a prominent phylogeographic role. Numerous studies have identified distinct north-south and/or east-west lineage breaks involving the Transverse Ranges. However, in evaluating their findings, most authors have regarded this complex system somewhat simplistically. In this study we more deeply investigate these breaks using two approaches: first we examine the phylogeographic history of Sepedophilus castaneus (Coleoptera: Staphylinidae) and then implement a comparative phylogeography approach applying Brooks parsimony analysis to the topologies of nine additional taxa. Phylogenetic analysis, nested clade analysis, and AMOVAs for S. castaneus agree that there is a major lineage break between the eastern and western Transverse Ranges, localized between the Sierra Pelona and the San Gabriel Mountains. The comparative phylogeographic analysis supports a generally strong concordance of area relationships with geographic proximity. It is notable, however, that the Transverse Ranges as a group do not show phylogenetic cohesion, but rather they are split into three main regions: an eastern region (San Gabriel, San Bernardino, and San Jacinto Mountains), a central region (central Transverse Ranges and Sierra Pelona) that is often grouped with the Tehachapi and Sierra Nevada populations, and a western region (northwestern Transverse Ranges and Santa Ynez Mountains) that is consistently grouped with coast range areas to the north. The lineage break between east and west Transverse Ranges is attributable to the presence of a marine embayment in what is now the Santa Clara River valley 5-2.5 million years ago. 相似文献
8.
Nikolaev S Montoya-Burgos JI Margulies EH;NISC Comparative Sequencing Program Rougemont J Nyffeler B Antonarakis SE 《PLoS genetics》2007,3(1):e2
Understanding the early evolution of placental mammals is one of the most challenging issues in mammalian phylogeny. Here, we addressed this question by using the sequence data of the ENCODE consortium, which include 1% of mammalian genomes in 18 species belonging to all main mammalian lineages. Phylogenetic reconstructions based on an unprecedented amount of coding sequences taken from 218 genes resulted in a highly supported tree placing the root of Placentalia between Afrotheria and Exafroplacentalia (Afrotheria hypothesis). This topology was validated by the phylogenetic analysis of a new class of genomic phylogenetic markers, the conserved noncoding sequences. Applying the tests of alternative topologies on the coding sequence dataset resulted in the rejection of the Atlantogenata hypothesis (Xenarthra grouping with Afrotheria), while this test rejected the second alternative scenario, the Epitheria hypothesis (Xenarthra at the base), when using the noncoding sequence dataset. Thus, the two datasets support the Afrotheria hypothesis; however, none can reject both of the remaining topological alternatives. 相似文献
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10.
Pruitt WM Karnoub AE Rakauskas AC Guipponi M Antonarakis SE Kurakin A Kay BK Sondek J Siderovski DP Der CJ 《Biochimica et biophysica acta》2003,1640(1):61-68
Intersectin-long (ITSN-L) contains the invariant Dbl homology (DH) and pleckstrin homology (PH) domain structure characteristic of the majority of Dbl family proteins. This strict domain topography suggests that the PH domain serves an essential, conserved function in the regulation of the intrinsic guanine nucleotide exchange activity of the DH domain. We evaluated the role of the PH domain in regulating the DH domain function of ITSN-L. Surprisingly, we found that the PH domain was dispensable for guanine nucleotide exchange activity on Cdc42 in vitro, yet the PH domain enhanced the ability of the DH domain to activate Cdc42 signaling in vivo. PH domains can interact with phosphoinositide substrates and products of phosphatidylinositol 3-kinase (PI3K). However, PI3K activation did not modulate ITSN-L DH domain function in vivo. 相似文献