Quantitative characteristics and reconstruction of the surface topography of histochemical markers on nerve cell plasmalemma

An electron-microscopic study of the topography of carbohydrate residues on the surface of the cell body membrane of cultured spinal neurons was carried out using lectins from wheat (WGA) and snail (HPL), labeled with colloidal gold, as specific molecular probes. Mathematical methods of analysis suggested a set of surface markers, from the distribution of particles observed in electron micrographs of random sections, corresponding to two random functions. Analysis of these functions allows the required quantitative characteristics to be obtained. The Monte Carlo reconstructing model is described, and results of its use (based on the aforementioned experimental data) are demonstrated in the form of "averaged" surface topography of the studied markers in a limited section of the membrane. The results obtained are discussed in connection with cooperative properties of the membrane.A. A. Bogomolets Institute of Physiology, Academy of Sciences of the Ukrainian SSR, Kiev. Translated from Neirofiziologiya, Vol. 23, No. 5, pp. 595–603, September–October, 1991.     

Adenovirus serotype determines association and localization of the large E1B tumor antigen with cellular tumor antigen p53 in transformed cells.

The distribution and stability of the cellular tumor antigen p53 were studied in baby rat kidney cells transformed by region E1 sequences of nononcogenic adenovirus (Ad) type 5 (Ad5) or oncogenic type 12 (Ad12). In transformed cells expressing the large E1B T antigen of Ad5, p53 was associated with this T antigen. The complexed proteins were concentrated in a cytoplasmic body, which has been shown to consist of a cluster of 8-nm filaments (A. Zantema et al., Virology 142:44-58, 1985). In transformed cells expressing the E1B region of Ad12, however, no association between the viral large T antigen and p53 was detectable. In the latter case, both proteins were found almost exclusively in the nucleus. The stability of p53 in both Ad5- and Ad12-transformed cells was increased relative to that in primary cells or cells immortalized by the E1A region only. Thus, the increased stability of p53 in Ad-transformed cells is not caused by association with a viral T antigen, but it correlates with expression of E1B and with morphological transformation.     

STING Millennium Suite: integrated software for extensive analyses of 3d structures of proteins and their complexes

Background  

The integration of many aspects of protein/DNA structure analysis is an important requirement for software products in general area of structural bioinformatics. In fact, there are too few software packages on the internet which can be described as successful in this respect. We might say that what is still missing is publicly available, web based software for interactive analysis of the sequence/structure/function of proteins and their complexes with DNA and ligands. Some of existing software packages do have certain level of integration and do offer analysis of several structure related parameters, however not to the extent generally demanded by a user.     

Rational design of pyrrolo

Models have been developed for the interaction of the pyrrolo[1,2-a]benzimidazole (PBI) antitumor agents with the two-electron activating enzyme DT-diaphorase and the DNA major groove. The DT-diaphorase model and experimental results indicate that the S-enantiomer of 3-carbamido PBI can enantioselect ovarian cancers. The reduced PBI interacts with the DNA major groove at AT base pairs by forming Hoogsteen-like hydrogen bonds. The reduced 3-amino PBI forms three hydrogen bonds in the major groove with the amino group acting as an H-bond donor to the thymine carbonyl. The DNA-binding model will permit the design of major groove recognition agents.     

DETECTION AND ENUMERATION OF H2S+ BACTERIA: APPLICATION TO SHEWANELLA PUTREFACIENS (CIP)

H₂S⁺ bacteria responsible for the degradation of sulfur-containing amino acids of fish muscle are currently little used to evaluate the microbiological pal quality of fish. Shewanella putrefaciens greatly predominates in this flora, and was therefore used to define a suitable culture method and medium. Inoculations by the Spiral surface method at 25C, with an incubation of 72h, gave the best counts on a medium containing two sources of sulfur (organic and inorganic) for H₂S⁺ bacteria. The culture medium and the NaCl concentration were determinant in the evaluation of this flora. At present there is no standard medium which meets these requirements.     

Co-Expression of Glutamic Acid Decarboxylase Isoform 67, Membrane Nicotinic Acetylcholine Receptors,and Connexin 36 in Ischemia-Resistant Hippocampal Interneurons

As is known, hippocampal pyramidal neurons are highly sensitive to cerebral ischemia, while some other hippocampal neurons (particularly, interneurons) survive and keep their functional activity under these conditions for a longer time. We studied interneurons of the rat hippocampal organotypic culture after 30-min-long oxygen-glucose deprivation (OGD) using immunohistochemical approaches. Four and 24 h after OGD, the somata of interneurons with no signs of degeneration (revealed by propidium iodide, PI, staining) were immunopositive to antibodies against glutamic acid decarboxylase isoform 67 (GAD67) and to an extracellular domain of a7 nicotinic acetylcholine receptor (nAChR) but negative with respect to choline acetyltransferase (ChAT). GAD67/nAChR-positive interneurons were abundant within all layers of the hippocampal CA1-CA4 zones and also in the dentate gyrus. Co-localized GAD67/nAChR immunopositivity was also observed on numerous punctuate terminals close to the somata of pyramidal neurons stained by PI. After OGD followed by incubation with a blocker of gap junctions, carbenoxolone, only single PI-stained units were revealed in the pyramidal layer. In experiments with connexin 36 cyan fluorescent protein (Cx36-CFP) on gene-reporter mice, we have found that the combination of GAD67/nAChR immunopositivity and ChAT negativity in the hippocampus is specific for the interneuronal somata expressing Cx36-CFP, a component of electrotonic gap contacts in the neuronal networks. Our results indicate that OGD-resistant hippocampal interneurons display co-localization of GAD67, a7 nAChR, and Cx36-CFP. By these neurochemical features, OGD-resistant neurons can be classified as inhibitory GABA-ergic acetylcholine-sensitive interneurons able to couple electrotonically with other hippocampal units through Cx36-CFP-containing gap junctions. The existence of hippocampal interneurons coexpressing the above factors shows that further investigations towards elucidation of cooperative endogenic mechanisms responsible for cerebral neuroresistance are expedient.     

Store-operated Ca2+ entry in astrocytes: different spatial arrangement of endoplasmic reticulum explains functional diversity in vitro and in situ

Ca(2+) signaling is the astrocyte form of excitability and the endoplasmic reticulum (ER) plays an important role as an intracellular Ca(2+) store. Since the subcellular distribution of the ER influences Ca(2+) signaling, we compared the arrangement of ER in astrocytes of hippocampus tissue and astrocytes in cell culture by electron microscopy. While the ER was usually located in close apposition to the plasma membrane in astrocytes in situ, the ER in cultured astrocytes was close to the nuclear membrane. Activation of metabotropic receptors linked to release of Ca(2+) from ER stores triggered distinct responses in cultured and in situ astrocytes. In culture, Ca(2+) signals were commonly first recorded close to the nucleus and with a delay at peripheral regions of the cells. Store-operated Ca(2+) entry (SOC) as a route to refill the Ca(2+) stores could be easily identified in cultured astrocytes as the Zn(2+)-sensitive component of the Ca(2+) signal. In contrast, such a Zn(2+)-sensitive component was not recorded in astrocytes from hippocampal slices despite of evidence for SOC. Our data indicate that both, astrocytes in situ and in vitro express SOC necessary to refill stores, but that a SOC-related signal is not recorded in the cytoplasm of astrocytes in situ since the stores are close to the plasma membrane and the refill does not affect cytoplasmic Ca(2+) levels.     

Spatial distribution of synaptic vesicles in presynaptic terminals: Computer simulation

A procedure for computer simulation is proposed, which allows one to quantitatively characterize the spatial distribution of synaptic vesicles in presynaptic terminals (PST) using ultrathin sections of such terminals. The procedure includes three stages: simulation, topographical analysis, and comparison. At the first stage, the spatial distribution of vesicles within a PST and the process of random sectioning of it are simulated using the corresponding mathematical model. At the second stage, the topographical distribution of vesicle profiles within the plane of PST section is estimated; three respective approaches have been used: (i) nearest neighbor distance distribution; (ii) minimal spanning tree; and (iii) Voronoi paving. At the third stage, the simulated parameters are compared with the parameters of native terminal sections; when the coincidence of these two parameter groups is satisfactory, we believe that the simulated spatial distribution agrees with the real distribution. The software for the procedure is written in C++ programing langage. The results of a pilot study on ultrathin sections of cultured rat hippocampal neurons showed that the method offers broad possibilities for spatial interpretation and quantitative characterization of distributions of synaptic vesicles.     

Geometrical characteristics of mitochondria and active presynaptic zones in the dorsal horn of the cat spinal cord

A morphometric electron microscope study was carried out on the ultrastructure of 140 presynaptic terminals (PT) in the dorsal horn of the cat spinal cord. Some spatial characteristics of mitochondria and active zones (AZ) for these PT were examined using statistical stereological analysis techniques. The distribution of 3-dimensional mitochondrial radii was determined, together with average mitochondrial volume, mean area of the external membrane, and average numbers of the test population falling within the PT. Distribution of diameters and estimates of mean area of AZ were obtained, as well as of mean value of synaptic clefts. The relationship between findings from morphometric research and parameters of processes underlying ionic transmembrane diffusion and accumulation is discussed.Dnepopetrovsk State University. A. A. Bogomolets Institute of Physiology, Academy of Sciences of the Ukrainian SSR. Translated from Neirofiziologiya, Vol. 21, No. 6, pp. 741–747, November–December, 1989.     

Numerical characteristics of synaptic vesicular apparatus structure in the dorsal horn of the cat spinal cord

Statistical parameters characterizing the structure of the vesicular apparatus of presynaptic endings (PE) were determined from the findings of ultrastructural morphometric analysis of 135 synapses in the dorsal horn of the cat spinal cord. Quantitative estimates of vesicles in the PE (averaging about 470) were obtained, based on stereometric principles. The bimodal pattern of distribution of distances from the center of each vesicle to the nearest portion of the active zone was demonstrated — viewed as the structural correlate of the two-pool model of transmitter storage. The possibility of classifying PE according to the sign of vesicle spatial distribution is discussed as well as the relationship between this distribution and parameters of transmitter mobilization and synaptic release.Dnepropetrovsk State University. A. A. Bogomolets Institute of Physiology, Academy of Sciences of the Ukrainian SSR, Kiev. Translated from Neirofiziologiya, Vol. 21, No. 5, pp. 597–605, September–October, 1989.